Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B11
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0765 - 27910189-27912393,27912521-27912598                       31   1.2  
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    30   2.8  
10_08_0984 + 22038814-22039176,22039285-22039338,22039418-22039477     30   2.8  

>04_04_0765 - 27910189-27912393,27912521-27912598
          Length = 760

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +2

Query: 527 APPGRASQNRRSVRGAXPTGL*XTGV---PPEAPLRSPVPTLXLTDTCPP 667
           APP   +    S R A P GL   G+    P  PL  P P L L D+  P
Sbjct: 262 APPPHVAAVALSPRAASPAGLLSPGLVSSSPAGPLGGPSPPLRLVDSAGP 311


>12_02_0953 -
           24736642-24736673,24737104-24737188,24737267-24737386,
           24737484-24737549,24737629-24737799,24737901-24737999,
           24738075-24738186,24738282-24738343,24738412-24738483,
           24738583-24738681,24738764-24738997,24739104-24739178,
           24739299-24739386,24739478-24739638,24739734-24739841,
           24739934-24741922,24742007-24742279,24742957-24743295,
           24743449-24745038,24745166-24745241,24745333-24745412,
           24745614-24745679,24745761-24745830,24745899-24746134,
           24746149-24746319,24746915-24747097,24747176-24747241,
           24747326-24747389,24747472-24747530,24747612-24747699,
           24747799-24747891,24747956-24748116,24748215-24748307,
           24748405-24748518,24748654-24748773,24748852-24748935,
           24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +2

Query: 470 PAKGQEP*KGRVAGV-FHRLAPPGRASQNRRSVRGAXPTGL*XTGVPPEAPLRSPVPTLX 646
           P +G+E    RV G  +  ++ PGR  + + S   A   G   T   P   +  P  ++ 
Sbjct: 112 PPRGEEQPPPRVGGTPYSAVSTPGR-HRGKSSAAAASEGGGGSTQSTPTKSVTKPAYSIG 170

Query: 647 LTDTCPPFSLRXRGA 691
           ++ + PP S   RGA
Sbjct: 171 MSASRPPMSSGQRGA 185


>10_08_0984 + 22038814-22039176,22039285-22039338,22039418-22039477
          Length = 158

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 392 YRSPQPNDRAQRVSERGS-GRAPNTQTASPRAFG 294
           +R P P   A RVS R + GR     T SPRAFG
Sbjct: 7   WRPPPPPAAAGRVSLRPAYGRRSRAATVSPRAFG 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,555,110
Number of Sequences: 37544
Number of extensions: 337057
Number of successful extensions: 842
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)