Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B10
         (873 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             236   2e-62
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)            32   0.70 
SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   6.6  
SB_57200| Best HMM Match : Plasmodium_HRP (HMM E-Value=4.7)            28   8.7  
SB_17470| Best HMM Match : HC2 (HMM E-Value=2.8)                       28   8.7  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  236 bits (577), Expect = 2e-62
 Identities = 115/181 (63%), Positives = 131/181 (72%)
 Frame = +2

Query: 317  LXVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 496
            L +NG  ++VF+ +DP  IPWG+ GA+YVVESTGVFTT +KA  HL+GGAKKVIISAPSA
Sbjct: 840  LVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFTTLEKAGFHLKGGAKKVIISAPSA 899

Query: 497  DAPMFVVGVNLXAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 676
            DAPMFV+GVN   YDPS  V+SNASCTTNCLAPL KVI+DNF + EGLM           
Sbjct: 900  DAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKVINDNFGLEEGLMTTIHAYTATQK 959

Query: 677  XXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPXS*WQADWNGFXVPXANVSXXXSX 856
              DGPS K WRDGRGA QN+IPASTGAAKAVGKVIP    +     F VP A+VS     
Sbjct: 960  TVDGPSAKNWRDGRGAHQNVIPASTGAAKAVGKVIPEVNGKLTGMAFRVPVADVSVVDLT 1019

Query: 857  C 859
            C
Sbjct: 1020 C 1020



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +1

Query: 247 VYLFKYDSTHGRFKGSVEVQDGFL 318
           VY+FKYDSTHGRFKG+VE +DG L
Sbjct: 817 VYMFKYDSTHGRFKGTVEAKDGKL 840


>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
          Length = 277

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 486 LPVLMPPCLLWVLTXKLMTPLLRSSQMLL 572
           +PV+MP CL  +   K+M PLL  +++LL
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222


>SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 89  SVIQQIFYNLPITCQKLESMDLAALAVWCSVLLLKRELKWS 211
           S+ + +FY   I+C+KL S+D+ AL  + S  LL   +K S
Sbjct: 24  SLPKTVFYCKEISCRKLRSIDMTALRDYISSSLLHGTMKTS 64


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +3

Query: 393 LNML*SLLVSLPLQIKHLLTWREVLKKLLYQLP--VLMPPCLLWVLTXKLMTPLLRSSQM 566
           L +L  L V +PLQ+   LT  +VL  L   LP  VL+P  +L  L   +   +L   Q+
Sbjct: 419 LQVLIPLQVLIPLQV---LTPLQVLIPLQVLLPLQVLIPLQVLTPLQVLITLQVLTPPQV 475

Query: 567 LLAPQTVLPHLQRLFMI 617
           L  PQ + P LQ L ++
Sbjct: 476 LTPPQVLAP-LQVLILL 491


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 483 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 349
           D+I  +A P + A A S    T V S +Y+  AFP G    S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219


>SB_57200| Best HMM Match : Plasmodium_HRP (HMM E-Value=4.7)
          Length = 346

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 812 HSSQLAIKXQG*PYPQLWQHQ*RQE*CFVEHHGHHAIIFQKVH-QQFSV 669
           H S++  +  G  Y    ++   Q   F  +HGH   +F + H  Q+SV
Sbjct: 46  HQSKVFARYHGHQYKVFARYHGHQSKVFARYHGHQYKVFARYHCHQYSV 94


>SB_17470| Best HMM Match : HC2 (HMM E-Value=2.8)
          Length = 464

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 812 HSSQLAIKXQG*PYPQLWQHQ*RQE*CFVEHHGHHAIIFQKVH-QQFSV 669
           H S++  +  G  Y    ++   Q   F  +HGH   +F + H  Q+SV
Sbjct: 46  HQSKVFARYHGHQYKVFARYHGHQSKVFARYHGHQYKVFARYHCHQYSV 94



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 812 HSSQLAIKXQG*PYPQLWQHQ*RQE*CFVEHHGHHAIIFQKVH-QQFSV 669
           H S++  +  G  Y    ++   Q   F  +HGH   +F + H  Q+SV
Sbjct: 285 HQSKVFARYHGHQYKVFARYHGHQSKVFARYHGHQYKVFARYHCHQYSV 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,501,748
Number of Sequences: 59808
Number of extensions: 525178
Number of successful extensions: 1139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)