Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B09
         (889 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.79 
S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           24   1.4  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   1.4  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   2.4  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   7.4  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   7.4  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   7.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   9.8  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 462 TVPINSSTLCATRTEXGLLC 521
           T+ INS T+C T +  G+ C
Sbjct: 146 TMEINSDTMCVTFSNLGIQC 165


>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 551 QQKTXNLKTCFLNLKQSFPTVESANNLSLVE 643
           +Q+T +L   F +L++S PT+ S + LS ++
Sbjct: 6   RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 35


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 551 QQKTXNLKTCFLNLKQSFPTVESANNLSLVE 643
           +Q+T +L   F +L++S PT+ S + LS ++
Sbjct: 106 RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 135



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 704 EHSFEGXHDXRRSSHQLLRXFQ 639
           E+SF+G H  RR + Q     Q
Sbjct: 74  ENSFQGKHKSRRKAPQSFEDIQ 95


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 558 FCWKHSGPLSAMNKAIRS 505
           FC + +G L A+NKAI++
Sbjct: 360 FCGEKNGLLKAVNKAIKN 377


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 665 MTSXYREXPRKSVPHR 712
           M + YR+ PR S PH+
Sbjct: 115 MITFYRDEPRFSQPHQ 130


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 665 MTSXYREXPRKSVPHR 712
           M + YR+ PR S PH+
Sbjct: 275 MITFYRDEPRFSQPHQ 290


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 665 MTSXYREXPRKSVPHR 712
           M + YR+ PR S PH+
Sbjct: 275 MITFYRDEPRFSQPHQ 290


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = +1

Query: 691 SKECSTPTPAN 723
           +K+CS+PTP++
Sbjct: 44  TKDCSSPTPSD 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,966
Number of Sequences: 336
Number of extensions: 2950
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)