Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B09
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    27   2.7  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    26   8.2  

>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 321 LASSISVFRTFKSTSPLRQFPKVRNAASTXRDFXFSI 211
           L  S  VFR F+S++P   FP V  A    R F  S+
Sbjct: 9   LQLSWQVFRRFQSSNPQLSFPCVDQAQERSRQFEQSL 45


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = -2

Query: 429 LHTQGRTPCSTELIQPFS*ALLSQYFLXTSSSAPFGLASSISVFRTFK-STSPLRQFPKV 253
           + + G   C T  I P +   L  + L  +S+    + + I V +T K S  PL+ FP +
Sbjct: 119 ISSMGNVMCETPTI-PATIQHLFPHLLVYASNV---MEAFILVEKTLKKSPPPLKSFPDI 174

Query: 252 RNAASTXRDFXFSIVLGALRGHN 184
           +N  S         V+  LRGH+
Sbjct: 175 QNLMSIIHRLGPKFVV--LRGHH 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,403
Number of Sequences: 5004
Number of extensions: 49034
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)