Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B09
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0803 + 24737115-24737366,24738921-24739004,24739152-247392...    31   1.6  
11_08_0084 + 28260647-28262575                                         29   3.7  
01_06_1806 + 40012952-40016836                                         28   8.6  

>06_03_0803 +
           24737115-24737366,24738921-24739004,24739152-24739255,
           24739321-24739445,24739549-24739707,24740120-24740237,
           24740317-24740851,24740948-24741042,24741153-24741431,
           24741478-24741592,24741669-24741855,24741934-24742490
          Length = 869

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = -3

Query: 725 MFAGVGVEHSFEGXHDXRRSSHQLLRXFQQGSSYWRIPQWGSSVSNLKSMS*DXQSFAGS 546
           ++ G G++ S E  HD  R  HQ+L     GS    +  W   +S  K+ +    +++  
Sbjct: 116 VYMGKGLQGSTENRHDMLRLHHQMLTAVHDGS----LTNWMLGLSMEKAEASHVYTYSNG 171

Query: 545 TQGRFPR*TKQSXLR 501
            QG   +  KQ  ++
Sbjct: 172 FQGFAAKLNKQQAMK 186


>11_08_0084 + 28260647-28262575
          Length = 642

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 680 DXRRSSHQLLRXFQQGSSYW 621
           D RRS+H+LLR  +Q SS W
Sbjct: 277 DDRRSAHELLRQIKQHSSAW 296


>01_06_1806 + 40012952-40016836
          Length = 1294

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 392 SSVLXGVRP--CVCNDYANHINDAQNSTNQLIDFVC 493
           S+ L G  P   +CN+Y NH++ + N  +  I F C
Sbjct: 756 SNALTGTLPQSLLCNNYLNHLDVSNNHLSGHIQFSC 791


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,513,025
Number of Sequences: 37544
Number of extensions: 347417
Number of successful extensions: 718
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)