Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B09
         (889 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)          31   1.6  
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)                      28   8.8  
SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3)               28   8.8  

>SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)
          Length = 364

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 470 WYCFGHH*CGSHSRCIHKDAR 408
           W+C+G+   G  SRCIH+  R
Sbjct: 302 WFCWGYFSYGESSRCIHRGVR 322


>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
          Length = 1243

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 336 SAPFGLASSISVFRTFKSTSPLRQFP 259
           S PFG+ S+ S+ + F S + L++FP
Sbjct: 458 SLPFGIQSASSLVKLFLSNNKLKEFP 483


>SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3)
          Length = 430

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = +2

Query: 479 IDFVCYKDGXRI----ALFIAESGPECFQQKTXNLKTCFLNLKQSFPTVESAN---NLSL 637
           I++  +K+G ++    ++ I E+    F      +++C   +KQ FPTV+ A     LSL
Sbjct: 91  IEWPGFKEGHKLWEDASMHIQEACHSNFTLPNGRVRSCVRRMKQKFPTVDEAEEHYGLSL 150

Query: 638 VEXCAKVD 661
                ++D
Sbjct: 151 ASCLEELD 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,862,001
Number of Sequences: 59808
Number of extensions: 406644
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)