Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B09
         (889 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28550.1 68418.m03483 hypothetical protein                          29   5.4  
At3g58950.1 68416.m06569 F-box family protein contains F-box dom...    28   9.5  

>At5g28550.1 68418.m03483 hypothetical protein
          Length = 286

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 215 LKXKSLXVEAALRTFGNCLKGLVDLNVLKTEI-EEAKPNGALDEVXKKYCDKSA 373
           L+  S+  +  +RT   C++ L  + V K+++ E+  P  A+ +   + C KSA
Sbjct: 152 LEKASMVFKLCIRTVWTCVRLLCQIYVNKSDLSEDCLPKEAIIDFVSEACSKSA 205


>At3g58950.1 68416.m06569 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 417

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -2

Query: 690 GXSRXQEVISSTFAHXSTRLKLLADSTVGKLCFKFKKHVLRXSVFCWKHSGPLSAMNKAI 511
           G    +E++ S        L L ADS + K   K K  V    +  W   GP+  M K +
Sbjct: 50  GKREREEILLSFMDFVDNVLALQADSPIKKFSLKCKTGVHPRRLDAWARLGPVLPMLKTL 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,504,327
Number of Sequences: 28952
Number of extensions: 275719
Number of successful extensions: 625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)