Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B06
         (910 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0WX42 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    38   0.27 
UniRef50_Q0QJ87 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    34   5.8  

>UniRef50_Q0WX42 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=44; Protostomia|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Apoda limacodes
          Length = 310

 Score = 38.3 bits (85), Expect = 0.27
 Identities = 26/93 (27%), Positives = 30/93 (32%)
 Frame = -3

Query: 461 EPXXXPLXFXXGEXXXXLGFXLEXXXGGXXLIFWGEXXXFFFXXXXLVXXKXXGXNXXFF 282
           E    P  F  GE     GF +E   GG  LIF  E     F     +     G +    
Sbjct: 199 ETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSSILFMSMFFILMYMGGYSLSIL 258

Query: 281 FFLKXX*IFFXXXGXXGXXPXXXLXKXKXLXGK 183
           F+LK   I F      G  P     K   L  K
Sbjct: 259 FYLKMVLISFLFIWVRGTLPRYRYDKLMYLAWK 291


>UniRef50_Q0QJ87 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Xenos vesparum|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Xenos vesparum
          Length = 318

 Score = 33.9 bits (74), Expect = 5.8
 Identities = 22/80 (27%), Positives = 28/80 (35%)
 Frame = -3

Query: 461 EPXXXPLXFXXGEXXXXLGFXLEXXXGGXXLIFWGEXXXFFFXXXXLVXXKXXGXNXXFF 282
           E    P  F  GE     GF +E   G   LIF  E     F    +V     G    F+
Sbjct: 204 ESNRVPFDFIEGESELVSGFNIEYGSGYFALIFVAEYLSILFMCYMMVIFFMIGNLLSFY 263

Query: 281 FFLKXX*IFFXXXGXXGXXP 222
           F+LK   + +      G  P
Sbjct: 264 FYLKLIFLIYLYVLVRGSFP 283


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,940,478
Number of Sequences: 1657284
Number of extensions: 2768332
Number of successful extensions: 1410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82801539422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)