Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B05
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   2.7  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    27   3.6  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   4.7  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    26   6.3  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    26   6.3  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 554 LIPTLFTKKIRMKSLKWKLKLYSIQQY 634
           L+   FT+K  +K L+W ++ +SI +Y
Sbjct: 100 LLAPFFTEKNALKVLEWLIRRFSIHEY 126


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +1

Query: 412 VEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY 573
           V +L +E+D+  Q  +   P +  +  EN+K +    +   +G  +  NP  +Y
Sbjct: 377 VNDLLQELDKNSQNDNGHGPTMETNTTENQKDNARGQSNKGHGFSTSLNPYTLY 430


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
 Frame = +3

Query: 147  QLRMAGCVRDGSGAVRXGRLHQEEXXRHAGHRTDEGSKTENEFR*EPRLPQPGPGPXMRS 326
            Q  + G + +   + R  +  +EE  R     + EG+  E+E   EPR  +P P   +RS
Sbjct: 1229 QTTLDGSISNTKKSSRTKKKKEEETNR-GDETSPEGTVGEDEVEEEPRQAEP-PKRALRS 1286

Query: 327  CPGEGTP---CTWAAMATWKAPDLRSDGWAVRRRVN*RDRPEAAEAVD 461
              G+       T  +M T  A D  +   A+   ++     +A E VD
Sbjct: 1287 NSGKAASNKRTTRNSMKTHSAMDTLTAVAALDAELDNMSNEKAKEEVD 1334


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = -1

Query: 248 IRPVACMXXTLLLMEATXAHSTTAITNTTSHAQLN 144
           + P  C   T++  +    H+T  +   + H +LN
Sbjct: 342 VNPTQCEALTMVCAQVMGNHATITVAGASGHCELN 376


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 741 DFRSKAMKFQEKCSKTNGKKNKLVN 667
           DF+ K +   EKC+K  G+ +K +N
Sbjct: 259 DFKYKWLCINEKCNKLYGRHSKSIN 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,810
Number of Sequences: 5004
Number of extensions: 62478
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)