Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B05
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0034 + 207750-207794,207956-207988,208007-208037,208409-20...    31   1.6  
03_02_0744 + 10880496-10880891                                         30   2.8  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    29   3.8  
08_01_0882 - 8663006-8663068,8663260-8663328,8663410-8663515,866...    29   5.0  
01_01_0324 - 2613396-2613452,2613658-2613750,2614045-2614236,261...    29   5.0  
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541...    29   6.6  
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    29   6.6  
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726...    28   8.7  

>02_01_0034 +
           207750-207794,207956-207988,208007-208037,208409-208505,
           209238-209337
          Length = 101

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 455 CLCCLWSISLVNSSTNCPPVAPKVW 381
           CL  LW I +V+   +CP + P  W
Sbjct: 19  CLLTLWVIPIVDDDISCPDLMPPAW 43


>03_02_0744 + 10880496-10880891
          Length = 131

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 477 AAKHRRKQEEEQEPLQSYCKWTPK 548
           AA H R ++++ +PL+ YCK  P+
Sbjct: 99  AASHARDRKKDSDPLEEYCKDNPE 122


>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 231 HXXYXPPDGGDPRAQHHCHHEHNQ 160
           H  + PP    PR QHH HH H Q
Sbjct: 66  HHHHHPP----PRVQHHHHHHHQQ 85


>08_01_0882 -
           8663006-8663068,8663260-8663328,8663410-8663515,
           8663889-8663944,8664163-8664222,8664310-8664529,
           8664561-8664655,8664757-8664882,8664954-8665008,
           8666163-8666290
          Length = 325

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 407 CPPVAPKVWRFPRRHRCPRTWSTLAWTTPHXGTR 306
           C  V+P V     R R P  W  LA   PH G R
Sbjct: 10  CSGVSPAVSGTSHRRRRPAAWRALAPPPPHAGLR 43


>01_01_0324 -
           2613396-2613452,2613658-2613750,2614045-2614236,
           2614325-2614398,2615846-2616098,2616179-2616249,
           2616878-2617042,2617440-2617469,2617867-2617947,
           2618047-2618272
          Length = 413

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 349 VRGQRWRRGKRQTFGATGGQFVEE 420
           ++G R RRGK +  GA GGQ   E
Sbjct: 1   MKGDRVRRGKEEALGAGGGQLCPE 24


>08_02_1498 +
           27553449-27553730,27553834-27553946,27554063-27554129,
           27554310-27554402,27554516-27554659,27554860-27554954,
           27555120-27555412,27555514-27555632,27555742-27556094,
           27556177-27556286,27556403-27556512,27556802-27557671
          Length = 882

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +3

Query: 306 PGPXMRSCPGEGTPCTWAAMATWKAPDLRSDGWAVRRRVN*RDRPEAAEAVDGPAFPAAK 485
           PG  + +C G     TW   A  K P L ++ W  + RV   D P    A D  AF  A+
Sbjct: 230 PGEVIPTCNGRHCGDTWPGPADKKKPLLWTENWTAQYRVF-GDPPSQRSAED-IAFSVAR 287


>05_05_0155 +
           22787658-22787930,22788029-22788096,22789600-22789915,
           22790207-22790323
          Length = 257

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -3

Query: 255 NPHPSGGLHXXYXPPDGGDPRAQHHCHHEHNQPCA 151
           +PHP    H  + P     P   HH  H H  P A
Sbjct: 53  HPHPPHHPHPPHHPHPPHHPHPPHHHPHPHPDPAA 87


>06_01_0944 +
           7264833-7265120,7265511-7265600,7265702-7265798,
           7265927-7265988,7266508-7266596,7266702-7266822,
           7266915-7267058,7267492-7267820,7268154-7268394,
           7269042-7269245,7271150-7271619,7272703-7272746,
           7273121-7273211,7273494-7273596,7273682-7273783,
           7274214-7274300,7274421-7274531
          Length = 890

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 335 RGYSMYVGSDGDVESARPSERRVGS 409
           +GY MY G  GD+ + RP++RR+ S
Sbjct: 516 QGYRMYYGG-GDLPTIRPNKRRLAS 539


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,723,189
Number of Sequences: 37544
Number of extensions: 481544
Number of successful extensions: 1432
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)