Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_B05
(890 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.72
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_32858| Best HMM Match : DUF59 (HMM E-Value=6.4) 30 2.9
SB_48444| Best HMM Match : Death (HMM E-Value=2.1e-16) 30 2.9
SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0) 30 2.9
SB_57932| Best HMM Match : Death (HMM E-Value=9.4) 29 3.8
SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 29 6.7
SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41) 25 6.8
SB_47424| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 31.9 bits (69), Expect = 0.72
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 642 NQLYCCMEYNFSFHLRDFILIFL-VNKVGISIALASICSRIVEVPALLLVFFDAL 481
N Y C+ +NF + FIL +L N + ALA+ C + VEV ++ FD L
Sbjct: 448 NAGYTCLAHNFKGYDSYFILEYLFANGIKPKEALATYCHQDVEVLKKAVIAFDEL 502
>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1612
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 417 FYELPTRRSEGLALSTSPSLPTYMEYPRLDNSSXRDQARVVEGV 286
F LPT EG + LP Y+ P D+SS ++ R V G+
Sbjct: 248 FVILPTALYEGEKSNPYRHLPNYVTVPYSDHSSFKELLRFVSGI 291
>SB_32858| Best HMM Match : DUF59 (HMM E-Value=6.4)
Length = 235
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +1
Query: 418 ELTREIDQRQQRQSTAPPFLLQSIEEN--KKKSRNLYNPTANGR 543
E+T EI ++ ++Q+ + F L+S++EN K++ + P + GR
Sbjct: 24 EMTEEIMEKDEKQTKSQEFDLRSLQENLPKREPQEKDEPDSTGR 67
>SB_48444| Best HMM Match : Death (HMM E-Value=2.1e-16)
Length = 486
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +1
Query: 418 ELTREIDQRQQRQSTAPPFLLQSIEEN--KKKSRNLYNPTANGR 543
E+T EI ++ ++Q+ + F L+S++EN K++ + P + GR
Sbjct: 209 EMTEEIMEKDEKQTKSQEFDLRSLQENLPKREPQEKDEPDSTGR 252
>SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1410
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 424 TREIDQRQQRQSTAPPFLLQSIEENKKKSRNLY-NPTANGRQSDTNPNFIY 573
TRE ++R+++ + LL S + K ++LY P+ R++ P FIY
Sbjct: 957 TREAEEREKQGAVQQGTLLLSNTKGNPKLKDLYIRPSITQRKTPLTPPFIY 1007
>SB_57932| Best HMM Match : Death (HMM E-Value=9.4)
Length = 135
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +1
Query: 418 ELTREIDQRQQRQSTAPPFLLQSIEEN--KKKSRNLYNPTANGR 543
E+T E+ ++ ++Q+ + F L+S++EN K++ + P + GR
Sbjct: 44 EMTEEVMEKDEKQTKSQEFDLRSLQENLPKREPQEKDEPDSTGR 87
>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 240 RTDEGSKTENEFR*EPRLPQPGPG 311
R+D S+T+ F+ E R+ +PGPG
Sbjct: 452 RSDSNSQTKGSFKTEVRIAKPGPG 475
>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2429
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 296 TTRAWSLXEELSRRGYSMYVGSDGDVESARPSERRVG 406
TT A+S + R +SM+VG D D E+ + S +G
Sbjct: 2148 TTTAYSTVVRVFRTQFSMFVGGDPDWEALKSSSGFIG 2184
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 28.7 bits (61), Expect = 6.7
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = -3
Query: 645 ENQLYCCMEYNFSFHLRDFILIFLVN---KVGISIA-----LASICSRIVEVPALLLVFF 490
EN+ Y C+ +NF + FIL +L K + A LA+ C + VEV +V F
Sbjct: 655 ENEGYTCLAHNFKGYDSYFILEYLFENGFKPNVIFAGGKKELAAYCPQDVEVLKRAVVAF 714
Query: 489 DALQQE 472
D L E
Sbjct: 715 DKLIME 720
>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
Length = 131
Score = 25.0 bits (52), Expect(2) = 6.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 231 HXXYXPPDGGDPRAQHHCHHEHN 163
H + PP P HH HH+H+
Sbjct: 13 HQHHHPPSS--PSYHHHRHHQHH 33
Score = 22.2 bits (45), Expect(2) = 6.8
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -3
Query: 186 HHCHHEHNQP 157
HH HH H+ P
Sbjct: 67 HHYHHHHHPP 76
>SB_47424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 28.3 bits (60), Expect = 8.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3
Query: 192 AQHHCHHEHNQ 160
A+HHCHH H+Q
Sbjct: 130 AKHHCHHHHHQ 140
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,006,445
Number of Sequences: 59808
Number of extensions: 499464
Number of successful extensions: 1469
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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