Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B05
         (890 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117150-1|AAI17151.1|  729|Homo sapiens cytoplasmic polyadenyla...    30   9.8  
AB051460-1|BAB21764.1|  712|Homo sapiens KIAA1673 protein protein.     30   9.8  

>BC117150-1|AAI17151.1|  729|Homo sapiens cytoplasmic
           polyadenylation element binding protein 4 protein.
          Length = 729

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 267 FQFLNPHPSGGLHXXYXPPDGGDPRAQHHCHHEHNQPCAAEH 142
           FQ    H S G    + P  G  P +QHH HH H Q   ++H
Sbjct: 207 FQNFPHHVSPGFGGSFSPQIG--PLSQHHPHHPHFQHHHSQH 246


>AB051460-1|BAB21764.1|  712|Homo sapiens KIAA1673 protein protein.
          Length = 712

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 267 FQFLNPHPSGGLHXXYXPPDGGDPRAQHHCHHEHNQPCAAEH 142
           FQ    H S G    + P  G  P +QHH HH H Q   ++H
Sbjct: 207 FQNFPHHVSPGFGGSFSPQIG--PLSQHHPHHPHFQHHHSQH 246


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,100,103
Number of Sequences: 237096
Number of extensions: 2564785
Number of successful extensions: 10649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10509
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)