Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B05
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.70 
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.93 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 466 PPFLLQSIEENKKKSRNLYNPTANGRQSDTNP 561
           PP  ++  EE KKK++   +P+ N  + +  P
Sbjct: 530 PPSSMKETEEEKKKTKQSLSPSENQSKMEILP 561


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 747 HCKCLLANFEITKAKYVFK 803
           +C+C+L NF I     VFK
Sbjct: 62  YCECILKNFNILDKNNVFK 80


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 403 GQFVEELT--REIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDT 555
           G    ELT  +EI  RQ+R+S   P+L     EN  K   +Y     GR SD+
Sbjct: 449 GFLAGELTYSQEIGDRQERESELVPYL-----EN--KGNGVYAWIGAGRDSDS 494


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 350 TWSTLAWTTPHXGTRP 303
           +W TL WT  H   +P
Sbjct: 93  SWMTLMWTDSHLSWKP 108


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 306 PGPXMRSCPGEGTPCTW 356
           PG     C  +G PC+W
Sbjct: 535 PGTQEHVCGVKGIPCSW 551


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 753 CNXPDFRSKAMKFQEKCSKTNGK 685
           C+      K    +EKC + NGK
Sbjct: 363 CHTAHIACKFADIKEKCDRRNGK 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,729
Number of Sequences: 438
Number of extensions: 4579
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)