Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B05
         (890 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12810.1 68414.m01488 proline-rich family protein contains pr...    29   3.1  
At3g02280.1 68416.m00209 flavodoxin family protein low similarit...    29   4.1  
At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/PO...    28   9.6  

>At1g12810.1 68414.m01488 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 129

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 231 HXXYXPPDGGDPRAQHHCHHEHN 163
           H  + PP    P+   HCHH+H+
Sbjct: 76  HQHHGPPPPPPPQNYDHCHHDHH 98


>At3g02280.1 68416.m00209 flavodoxin family protein low similarity
           to SP|Q05001 NADPH-cytochrome P450 reductase (EC
           1.6.2.4) {Catharanthus roseus}, similar to
           NADPH-dependent FMN and FAD containing oxidoreductase
           [Homo sapiens] GI:6694369; contains Pfam profiles
           PF00258: flavodoxin, PF00667: FAD binding domain,
           PF00175: Oxidoreductase NAD-binding domain
          Length = 623

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = -1

Query: 404 PPVAPKVWRF---PRRHRCP--RTWSTLAWTTPHXGTRPGLWKAWFLS 276
           PP+ P+ +     P  H      T S ++W TP+  TR GL  +W  S
Sbjct: 394 PPLKPRAFSISSSPLAHPAAVHLTVSIVSWITPYKRTRKGLCSSWLAS 441


>At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           similar to p300/CBP acetyltransferase-related protein
           (GI:12597461) [Arabidopsis thaliana];  similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 364

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 393 SDGWAVRRRVN*RDRPEAAEAVDGPAFPAAKHRRKQEEEQEPLQSY 530
           ++GW V +R N     E  EAV        + RRK EE +  LQ Y
Sbjct: 193 TEGWKVMKRSNPLLEQELIEAVIESDSRKQERRRKLEEREVYLQLY 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,837,125
Number of Sequences: 28952
Number of extensions: 351904
Number of successful extensions: 1007
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)