Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B04
         (950 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0080 - 889548-889892                                             28   9.5  
02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666...    28   9.5  

>04_01_0080 - 889548-889892
          Length = 114

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = -2

Query: 379 IDLHNFINIQIPVHICQFSC 320
           +D+H+++N+ + + +C+F C
Sbjct: 84  VDIHDYLNLALHMQLCRFGC 103


>02_04_0343 -
           22166148-22166318,22166422-22166465,22166563-22166626,
           22166729-22167109,22167296-22167475,22167661-22167790,
           22167844-22167946,22168060-22168093,22168216-22168300,
           22168389-22168453,22168592-22168690,22168960-22169025,
           22169200-22169439
          Length = 553

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 317 RTLGRSQKHCGTXHGPTWS 261
           R LG +++HC T  GP WS
Sbjct: 147 RHLGDTKEHCSTYTGPRWS 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,466,607
Number of Sequences: 37544
Number of extensions: 118049
Number of successful extensions: 214
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)