Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B03
         (886 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    46   0.001
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    44   0.005
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    36   1.0  
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    34   4.2  
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    33   7.3  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 20/32 (62%), Positives = 22/32 (68%)
 Frame = +1

Query: 616 RGEAVCVLGALPXPRSLTRXARSFGCGXRYXL 711
           R   +C  G +P PRSLTR ARSFGCG RY L
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRL 57


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 44.0 bits (99), Expect = 0.005
 Identities = 22/35 (62%), Positives = 23/35 (65%)
 Frame = +1

Query: 592 CXNESATARGEAVCVLGALPXPRSLTRXARSFGCG 696
           C  + ATAR EAV VL ALP  RS TR  RS GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 36.3 bits (80), Expect = 1.0
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 644 APNTQTASPRAVADSXMQ 591
           APNTQTASPRA+ADS MQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 34.3 bits (75), Expect = 4.2
 Identities = 17/29 (58%), Positives = 17/29 (58%)
 Frame = -2

Query: 750 PXXXGITVLPPXXEXIPXXAXERPSXASQ 664
           P    ITVLPP  E  P  A ERPS ASQ
Sbjct: 33  PLILWITVLPPLSELTPLAAVERPSVASQ 61


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 33.5 bits (73), Expect = 7.3
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +2

Query: 590 SAXMNRPPPGERRFAYW 640
           +A MNRP  GERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,648,356
Number of Sequences: 1657284
Number of extensions: 3696332
Number of successful extensions: 5122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5122
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)