Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B02
         (871 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    65   2e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    54   5e-06
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    52   2e-05
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.047
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.33 
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    37   0.58 
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    35   3.1  
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    35   3.1  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 65.3 bits (152), Expect = 2e-09
 Identities = 44/105 (41%), Positives = 52/105 (49%)
 Frame = +2

Query: 317 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQXXTQEXTCEQKAXKRP 496
           R   +C  G +PLPRSLTR ARSFGCGERY+LT     G       T++   +++     
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD----GDGNFLEDTRKTLSKEEI---- 77

Query: 497 XTVKRPRCWRXSIXSAPLXXXTKIXAQXXXGXTXXDYXXXXXXPL 631
               RPR  R SI SAPL    K  AQ   G T  DY      PL
Sbjct: 78  ----RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPL 118


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 54.0 bits (124), Expect = 5e-06
 Identities = 31/57 (54%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +2

Query: 293 CINESAXARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQXXTQ 460
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ Q   Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 26/38 (68%), Positives = 26/38 (68%)
 Frame = -1

Query: 493 PFXGLLLTXXFLRXXLILWITVLPPLSELIPLAAAERP 380
           P    LLT  F    LILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.047
 Identities = 19/27 (70%), Positives = 20/27 (74%)
 Frame = +3

Query: 261 RFXVXVWXVFSALMNRPTRGXRRFAYW 341
           RF V    V +ALMNRPTRG RRFAYW
Sbjct: 15  RFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.9 bits (84), Expect = 0.33
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -2

Query: 363 ERGSGRAPNTQTASPRAXADSLMQ 292
           +R +  APNTQTASPRA ADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 37.1 bits (82), Expect = 0.58
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +1

Query: 412 HSKAVIRLSTESGXNAGK 465
           HSKAVIRLSTESG NAGK
Sbjct: 40  HSKAVIRLSTESGDNAGK 57


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 21/48 (43%), Positives = 23/48 (47%)
 Frame = +2

Query: 488 KRPXTVKRPRCWRXSIXSAPLXXXTKIXAQXXXGXTXXDYXXXXXXPL 631
           K+     + RC R SI SAPL   TKI AQ   G T  DY      PL
Sbjct: 4   KQSTGTSQRRC-RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPL 50


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 20/43 (46%), Positives = 21/43 (48%)
 Frame = +2

Query: 503 VKRPRCWRXSIXSAPLXXXTKIXAQXXXGXTXXDYXXXXXXPL 631
           V+ PR  R SI SAPL   TK  AQ   G T  DY      PL
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPL 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 327,770,558
Number of Sequences: 1657284
Number of extensions: 3546857
Number of successful extensions: 6555
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6552
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)