Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B01
         (862 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    28   0.11 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   7.2  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = +1

Query: 598 GGXXXPPPPPPPQXXXTPPXAXG--GXXAXPPP 690
           GG     PPP PQ   TP  + G     A PPP
Sbjct: 4   GGIYEESPPPAPQSAATPISSSGMTSPAAAPPP 36


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 613 PPPPPPPQ 636
           PPPPPPP+
Sbjct: 731 PPPPPPPR 738


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 613 PPPPPPPQXXXTP 651
           P P PPP+   TP
Sbjct: 99  PTPSPPPEERLTP 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,695
Number of Sequences: 336
Number of extensions: 2652
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)