Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B01
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.013
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.21 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.28 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.85 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   2.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 577 PPPPXXXGGXXXPPPPPPP 633
           PPPP    G   PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 577 PPPPXXXGGXXXPPPPPPP 633
           PPPP   G    PPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = +1

Query: 571 KXPPPPXXXGGXXXPPPPPPPQXXXTPPXAXGGXXAXPPPXG 696
           K PPPP        P P P P     P    GG    PPP G
Sbjct: 730 KSPPPPPP--AVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 577 PPPPXXXGGXXXPPPPPPP 633
           PPPP        PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
 Frame = +1

Query: 577 PPPPXXXGGXXXPPPPP------PPQXXXTPPXAXGG 669
           PPP    GG   PPPPP      PP     PP    G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 577 PPPPXXXGGXXXPPPPPPP 633
           PPPP        PPPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 29.1 bits (62), Expect = 0.85
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = +1

Query: 577 PPPPXXXGGXXXP--PPPPPP 633
           PPPP    G   P  PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 616 PPPPPPQXXXTPPXAXGGXXAXPPPXG 696
           PPPPPP     PP         PPP G
Sbjct: 9   PPPPPPPPGFEPP----SQPPPPPPPG 31



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 400 PPPXXXFFXXGXPPPPPXGG 341
           PPP   F     PPPPP  G
Sbjct: 12  PPPPPGFEPPSQPPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +1

Query: 562 SQKKXPPPPXXXGGXXX--PPPPPPPQ--XXXTPPXAXGGXXAXPPP 690
           S++    PP   G      PPPPPPP+     + P    G  A PPP
Sbjct: 318 SRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +1

Query: 613 PPPPPPP--QXXXTPPXAXGGXXAXPPP 690
           PPPPPPP  +    PP   G   +  PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPP 338



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
 Frame = +1

Query: 541 GGGGAFXSQKKXPPPPXXXGGXXXPPPP-----PPPQXXXTPPXAXGGXXAXPPP 690
           G G +  S    PPPP        P PP     PPP     PP +       PPP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP----PPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 727 PPLXGGXXXSPPXGGXGPXPPP 662
           PPL  G   +PP     P PPP
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPP 478



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 20/90 (22%), Positives = 22/90 (24%), Gaps = 4/90 (4%)
 Frame = +1

Query: 577 PPPPXXXGGXXXPPPPPPPQ----XXXTPPXAXGGXXAXPPPXGGXXXXXXXXXXXRQQK 744
           PP P    G    PP  PP+        P          PPP              R   
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313

Query: 745 KFXXXXXHRXXPXXGRXGGGXXXXXAPPPP 834
                  +R  P  G           PPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
 Frame = +1

Query: 613  PPPPPPPQXXXTPPXAX----GGXXAXPPP 690
            P PPPPP     PP A     G   A PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 598 GGXXXPPPPPPP 633
           GG   PPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 562 SQKKXPPPPXXXGGXXXPPPPPPP 633
           S+ + P       G   PPPPPPP
Sbjct: 290 SKTQAPSSGDSANGGLPPPPPPPP 313


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 577  PPPPXXXGGXXXPPPPPPPQXXXTPPXAXGGXXAXPP 687
            PP P    G   PP PPP +    P  + G     PP
Sbjct: 1179 PPVPKPAAGV--PPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +1

Query: 577  PPPPXXXGGXXXPPPPPPPQXXXTPPXAXGGXXAXPPPXG 696
            P P    G    PPP P P        A  G    P P G
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSG 1090


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 629 GGGGGGXXXPPXXXGGGGXF 570
           GG GGG   PP   GG G F
Sbjct: 191 GGFGGGSGGPPPGPGGFGGF 210


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 616 PPPPPPQXXXTPPXAXGGXXAXPPP 690
           P PP PQ    PP +     + PPP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPP 152


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
 Frame = +1

Query: 577 PPPPXXXGGXXXPPPP---PPPQXXXTPPXAXGGXXAXPPP 690
           PPP     G   PPPP    P +    PP         PPP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
 Frame = +1

Query: 577 PPPPXXXGGXXXPPPP---PPPQXXXTPPXAXGGXXAXPPP 690
           PPP     G   PPPP    P +    PP         PPP
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
 Frame = +1

Query: 577 PPPPXXXGGXXXPPPP---PPPQXXXTPPXAXGGXXAXPPP 690
           PPP     G   PPPP    P +    PP         PPP
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
 Frame = +1

Query: 577 PPPPXXXGGXXXPPPP---PPPQXXXTPPXAXGGXXAXPPP 690
           PPP     G   PPPP    P +    PP         PPP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,009
Number of Sequences: 5004
Number of extensions: 27911
Number of successful extensions: 267
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)