Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A24
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    81   2e-16
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    78   2e-15

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 46/135 (34%), Positives = 57/135 (42%)
 Frame = +1

Query: 328 FXXXXXEXGXGKXVGGXVXVDXEXXVVDEVXXGXXRXLFXXEXXIXGKEDXXXXYXXGXX 507
           F     E G GK V   + VD E  V+D+V  G  + LF  E  + GKED    Y  G  
Sbjct: 53  FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112

Query: 508 XIGKEXVDLVLXRXXKXXXXCXGXXGXXXXXXXGGGXGXGXXXLLMEXXXVXXGKKXKXE 687
            +GKE +D VL R  +    C G  G       GGG G G   LL+E   +  GKK   +
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQ 172

Query: 688 XXXXXXXXXXXXVVE 732
                       VVE
Sbjct: 173 FSVYPAPQVSTSVVE 187



 Score = 34.7 bits (76), Expect = 0.019
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = +3

Query: 183 MXEXXXVXVGXXGVXXGNXCWEXXXXEXGXXXDG 284
           M E   V VG  GV  GN CWE    E G   DG
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG 34


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 47/135 (34%), Positives = 56/135 (41%)
 Frame = +1

Query: 328 FXXXXXEXGXGKXVGGXVXVDXEXXVVDEVXXGXXRXLFXXEXXIXGKEDXXXXYXXGXX 507
           F     E G GK V   + VD E  V+D+V  G  R LF  E  I GKED    Y  G  
Sbjct: 49  FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108

Query: 508 XIGKEXVDLVLXRXXKXXXXCXGXXGXXXXXXXGGGXGXGXXXLLMEXXXVXXGKKXKXE 687
            +GKE VD V  +  +    C G  G       GGG G G   LL+E   +   KK K +
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQ 168

Query: 688 XXXXXXXXXXXXVVE 732
                       VVE
Sbjct: 169 FSVYPAPQVSTSVVE 183



 Score = 32.3 bits (70), Expect = 0.099
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 183 MXEXXXVXVGXXGVXXGNXCWEXXXXEXGXXXDGXM 290
           M E   + VG  G   GN CWE    E G   +G M
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYM 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 749,472
Number of Sequences: 5004
Number of extensions: 3875
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)