Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A24
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918...    88   8e-18
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    87   1e-17
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    87   1e-17
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    79   6e-15

>07_03_0994 +
           23190344-23190456,23191367-23191581,23191663-23191862,
           23192420-23192928,23193048-23193363
          Length = 450

 Score = 88.2 bits (209), Expect = 8e-18
 Identities = 51/124 (41%), Positives = 56/124 (45%)
 Frame = +1

Query: 310 GVEXIXFXXXXXEXGXGKXVGGXVXVDXEXXVVDEVXXGXXRXLFXXEXXIXGKEDXXXX 489
           GV    F     E G GK V   + VD E  V+DEV  G  R LF  E  I GKED    
Sbjct: 43  GVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANN 102

Query: 490 YXXGXXXIGKEXVDLVLXRXXKXXXXCXGXXGXXXXXXXGGGXGXGXXXLLMEXXXVXXG 669
           +  G   +GKE VDL L R  K    C G  G       GGG G G   LL+E   V  G
Sbjct: 103 FARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162

Query: 670 KKXK 681
           KK K
Sbjct: 163 KKSK 166



 Score = 37.9 bits (84), Expect = 0.011
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +3

Query: 183 MXEXXXVXVGXXGVXXGNXCWEXXXXEXGXXXDGXMXXXKXXGGGXDXF 329
           M E   + +G  G+  GN CWE    E G   DG M      G   D F
Sbjct: 1   MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAF 49


>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 51/118 (43%), Positives = 54/118 (45%)
 Frame = +1

Query: 328 FXXXXXEXGXGKXVGGXVXVDXEXXVVDEVXXGXXRXLFXXEXXIXGKEDXXXXYXXGXX 507
           F     E G GK V   V VD E  V+DEV  G  R LF  E  I GKED    +  G  
Sbjct: 49  FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKEDAANNFARGHY 108

Query: 508 XIGKEXVDLVLXRXXKXXXXCXGXXGXXXXXXXGGGXGXGXXXLLMEXXXVXXGKKXK 681
            IGKE VDL L R  K    C G  G       GGG G G   LL+E   V  GKK K
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 166



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = +3

Query: 183 MXEXXXVXVGXXGVXXGNXCWEXXXXEXGXXXDGXMXXXKXXGGGXDXF 329
           M E   + +G  G+  GN CWE    E G   DG M   K  GGG D F
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAF 49


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 51/118 (43%), Positives = 54/118 (45%)
 Frame = +1

Query: 328 FXXXXXEXGXGKXVGGXVXVDXEXXVVDEVXXGXXRXLFXXEXXIXGKEDXXXXYXXGXX 507
           F     E G GK V   V VD E  V+DEV  G  R LF  E  I GKED    +  G  
Sbjct: 49  FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGCYRQLFHPEQLINGKEDAANNFARGHY 108

Query: 508 XIGKEXVDLVLXRXXKXXXXCXGXXGXXXXXXXGGGXGXGXXXLLMEXXXVXXGKKXK 681
            IGKE VDL L R  K    C G  G       GGG G G   LL+E   V  GKK K
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 166



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +3

Query: 183 MXEXXXVXVGXXGVXXGNXCWEXXXXEXGXXXDGXMXXXKXXGGGXDXF 329
           M E   + +G  G+  GN CWE    E G   DG M   +  GGG D F
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPSDRTVGGGDDAF 49


>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 46/124 (37%), Positives = 54/124 (43%)
 Frame = +1

Query: 310 GVEXIXFXXXXXEXGXGKXVGGXVXVDXEXXVVDEVXXGXXRXLFXXEXXIXGKEDXXXX 489
           G+    F     E   GK V   + VD E  V+DEV  G  R LF  E  I  KED    
Sbjct: 103 GIARDAFNTFFSETSSGKHVPRALFVDLEPTVIDEVKTGPYRQLFHPEQLISYKEDAANN 162

Query: 490 YXXGXXXIGKEXVDLVLXRXXKXXXXCXGXXGXXXXXXXGGGXGXGXXXLLMEXXXVXXG 669
           +  G   +G+E VDL L R  K    C G  G       GGG G G   LL+E   V  G
Sbjct: 163 FARGHYTVGREVVDLCLDRLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 222

Query: 670 KKXK 681
           +K K
Sbjct: 223 RKSK 226



 Score = 35.1 bits (77), Expect = 0.078
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 183 MXEXXXVXVGXXGVXXGNXCWEXXXXEXGXXXDGXM 290
           M E   + +G  G+  GN CWE    E G   DG M
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGLM 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,311,951
Number of Sequences: 37544
Number of extensions: 42179
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)