Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A22
         (872 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)            120   1e-27
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               46   4e-05
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               46   4e-05
SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)               34   0.17 
SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)           31   1.6  
SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)                      30   2.1  
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                      29   6.6  

>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score =  120 bits (290), Expect = 1e-27
 Identities = 56/79 (70%), Positives = 65/79 (82%)
 Frame = +2

Query: 581 GYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEY 760
           GYRAQHS HR+P KGGIR+S DV  DEV+AL+ LMTFKCA VDVPFGGAK GIKI+P ++
Sbjct: 118 GYRAQHSHHRSPCKGGIRYSEDVDIDEVQALATLMTFKCAVVDVPFGGAKGGIKIDPSQH 177

Query: 761 SEHELEKITRRFTLXTCQK 817
           S  ELEKITRRFT+   +K
Sbjct: 178 SVTELEKITRRFTVELAKK 196



 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
 Frame = +1

Query: 352 IPTSANPKFFHMVEYFFHRACQVVEDKLVE--DLKSRTP--IEEKKKKVAGILKLMEPCD 519
           + +   P F  M   FF +A   VE +L+   D   + P   E+KK ++ GIL +M+PC 
Sbjct: 38  VESDTEPSFTEMCAGFFDQARTYVEHRLLTRPDPPGKIPEKFEDKKHRIKGILDVMKPCQ 97

Query: 520 HILEIQFPLRRDSGDYEMILG 582
            +L + FP++ D+G+Y+++ G
Sbjct: 98  DVLSVVFPIKLDNGEYKLVQG 118


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +2

Query: 581 GYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEY 760
           GYR + ++   P KGG+RF   V    +K L      K +   +P GG K G   +PK  
Sbjct: 405 GYRVEFNSSIGPYKGGLRFHPSVNLGILKFLGFEQVLKNSLTTLPMGGGKGGSNFDPKGK 464

Query: 761 SEHELEKITRRFTL 802
           +++E+ +  + F L
Sbjct: 465 TDNEVMRFCQSFML 478


>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 448

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +2

Query: 581 GYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEY 760
           G+R + ++   P KGG+RF   V    +K L      K +   +P GG K G   +PK  
Sbjct: 78  GFRVEFNSTIGPYKGGLRFHPTVNLGILKFLGFEQVLKNSLTTLPLGGGKGGSDFDPKGK 137

Query: 761 SEHELEKITRRF 796
           S+HE+    + F
Sbjct: 138 SDHEVMSFCQSF 149


>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 486

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +2

Query: 581 GYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEY 760
           G+R + ++   P KGG+RF   V    +K L      K +   +P GG K G   +PK  
Sbjct: 116 GFRVEFNSTIGPYKGGLRFHPTVNLGILKFLGFEQVLKNSLTTLPLGGGKGGSDFDPKGK 175

Query: 761 SEHELEKITRRF 796
           S+HE+    + F
Sbjct: 176 SDHEVMSFCQSF 187


>SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
          Length = 312

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 244 SVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSA 366
           +V  +A+NT   ++   +N CCRT  +  I    K +PT A
Sbjct: 251 TVPTKAINTCKTVLTKAINTCCRTVPTKAINTCCKTVPTKA 291


>SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 414 TGSVEKIFYHVEELRIRTCRNIFELIWNLMTSVCAAADIHSSWYDSEHCIEGF 256
           TG+V   +YH  +L I +  NI    W     VC   D   ++Y S++ I+ F
Sbjct: 203 TGAVYTDYYHDSDLTIGSVLNI----WGRKFQVCDCDDFTKAYYKSKYGIDSF 251


>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
          Length = 889

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 677 LITP*LHLWLRPLRIEYLLWLESCVWNVVRDSPNII 570
           +I P    WL  L I  LLW   CV+ ++RDS  ++
Sbjct: 414 VILPEFAYWLCLLTISLLLWQPLCVYTLLRDSHTML 449


>SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)
          Length = 582

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +1

Query: 313 TYASHEIPDKLKDIPTSANPKFFHMVEYFFHR--ACQVVEDKLVEDLKSRTPIEEKKKKV 486
           TY+  E+ D L++  +S     FH+  +  HR     +++ + V+D K +TP  E KK  
Sbjct: 334 TYSQSELMD-LRNNSSSLTD--FHI--FCLHRWLPANLLKPEAVKDAKKQTPDLEFKKWT 388

Query: 487 AGILKLMEPCDHILEIQFPLRRD 555
            GIL        I E+  PL+R+
Sbjct: 389 KGILDHAGTVSAISEVIEPLKRN 411


>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +3

Query: 345 QRYSYKCESEVLPHGRIFFPPSLSSC 422
           QR  YK  SE   HGR  FP SL  C
Sbjct: 163 QRVGYKVSSEAHIHGRQSFPLSLDHC 188


>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 740 KINPKEYSEHELEKITRRFTLXTCQK 817
           K+ PKE+ E ++EK+  R T    Q+
Sbjct: 464 KVEPKEFDEDDVEKVVERLTRNASQR 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,528,165
Number of Sequences: 59808
Number of extensions: 550344
Number of successful extensions: 1180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)