Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_A22
(872 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi... 87 1e-17
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil... 83 2e-16
At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi... 82 5e-16
At1g51720.1 68414.m05828 glutamate dehydrogenase, putative simil... 43 3e-04
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 30 1.8
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p... 29 3.1
At5g37110.1 68418.m04454 hypothetical protein 29 4.1
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c... 29 5.4
>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
thaliana] SWISS-PROT:Q38946
Length = 411
Score = 87.0 bits (206), Expect = 1e-17
Identities = 40/75 (53%), Positives = 52/75 (69%)
Frame = +2
Query: 575 Y*GYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPK 754
Y G+R QH R P KGGIR+ +V DEV AL+ LMT+K A D+P+GGAK GI +P+
Sbjct: 51 YIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPR 110
Query: 755 EYSEHELEKITRRFT 799
+ S ELE++TR FT
Sbjct: 111 DLSLSELERLTRVFT 125
>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 83.4 bits (197), Expect = 2e-16
Identities = 39/73 (53%), Positives = 49/73 (67%)
Frame = +2
Query: 581 GYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEY 760
G+R QH R P KGGIR+ +V DEV AL+ LMT+K A +P+GGAK GI +P E
Sbjct: 53 GFRVQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSEL 112
Query: 761 SEHELEKITRRFT 799
S ELE++TR FT
Sbjct: 113 SLSELERLTRVFT 125
>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 81.8 bits (193), Expect = 5e-16
Identities = 38/73 (52%), Positives = 49/73 (67%)
Frame = +2
Query: 581 GYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEY 760
G+R QH R P KGGIR+ +V DEV AL+ LMT+K A +P+GGAK GI +P +
Sbjct: 53 GFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSKL 112
Query: 761 SEHELEKITRRFT 799
S ELE++TR FT
Sbjct: 113 SISELERLTRVFT 125
>At1g51720.1 68414.m05828 glutamate dehydrogenase, putative similar
to NADP-specific glutatamate dehydrogenase (NADP-GDH)
SP:P28724 [Giardia lamblia (Giardia intestinalis)]
Length = 637
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +2
Query: 581 GYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEY 760
G+R Q + P +GGIRF + K L T K A GGA G +PK
Sbjct: 264 GFRVQFNQALGPCRGGIRFHPSMNLSIAKFLGFQQTLKNALSPYKLGGASGGSDFDPKGK 323
Query: 761 SEHELEKITRRF 796
S++E+ + + F
Sbjct: 324 SDNEIMRFCQSF 335
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 611 TPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITR 790
+PT GIR VT +KA AL++ K V V K G ++ + + TR
Sbjct: 398 SPTSAGIRSGASVTPRSIKARRALLSDKNEKVSVTERNGKLGTHLSDEISVSEGFRRSTR 457
Query: 791 RFTLXTCQK 817
+ T +K
Sbjct: 458 QTTASKNEK 466
>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
protein (GI:507127) [Streptococcus pyogenes]
Length = 509
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 403 HRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMILG 582
HR+ VV++ + ++K + + K + I + E + + RR++ DYE LG
Sbjct: 422 HRSYAVVDEMVTREVKKDPAVRQVYKLLTSIHSIFEQISEKILMTDRFRRETVDYEKKLG 481
>At5g37110.1 68418.m04454 hypothetical protein
Length = 1307
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +1
Query: 322 SHEIPDKLKDIPTSANPKFFHMV-EYFFHRACQVVEDK--LVEDLKSRTPIEEKKKKVAG 492
S EIPDKLKD P+ F ++ E H C VV K +E+ K RT +KK
Sbjct: 532 SAEIPDKLKD------PELFEVIKESMVHGPCGVVNPKCPCMENGKRRTDDFVEKKDFKC 585
Query: 493 ILKLMEPCDHILEIQF 540
+ + P + L +++
Sbjct: 586 DNRYVIPYNRSLSLRY 601
>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
contains Pfam profile PF01040: UbiA prenyltransferase
family
Length = 954
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 629 IRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITR 790
+RF T ++ ++ L+ +TFK CV V + K I + E + L++I R
Sbjct: 605 VRF-TSLSTSRMRILAVALTFKSRCVYVNYEIPKDQILVGAAESDDPVLDRIAR 657
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,647,714
Number of Sequences: 28952
Number of extensions: 387826
Number of successful extensions: 886
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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