Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_A21
(1134 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 40 5e-04
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 37 0.006
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.014
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.032
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.13
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.22
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 31 0.39
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.52
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.68
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 29 1.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 1.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 1.6
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 28 2.1
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 27 4.8
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 40.3 bits (90), Expect = 5e-04
Identities = 24/60 (40%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = -2
Query: 998 GEXXXXGGWXGXAXAXXXGGGEFXSGRXGXXG--RGGRXXARXGRGGXRVXGGXGXGARG 825
G GG G G G F GR G G RGG R GRGG R G G RG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Score = 38.7 bits (86), Expect = 0.001
Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -2
Query: 1004 R*GEXXXXGGWXGXAXAXXXG-GGEFXSGRXGXXG-RGGRXXARXGRGGXRVXGGXGXGA 831
R G GG+ G G GG GR G G RGGR AR GRGG GG G GA
Sbjct: 11 RGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGS--SGGRG-GA 67
Query: 830 RG 825
+G
Sbjct: 68 KG 69
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 36.7 bits (81), Expect = 0.006
Identities = 19/35 (54%), Positives = 20/35 (57%)
Frame = -2
Query: 920 RXGXXGRGGRXXARXGRGGXRVXGGXGXGARGQXG 816
R G GRGGR R GRGG R GG G +RG G
Sbjct: 131 RNGPAGRGGRGGFRGGRGGSR--GGFGGNSRGGFG 163
Score = 26.6 bits (56), Expect = 6.4
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = -2
Query: 980 GGWXGXAXAXXXGGGEFXSGRXGXXGRGGRXXARXG--RGGXRVXGGXGXGARGQ 822
GG+ G G G G G RGG G RGG R GG G RG+
Sbjct: 141 GGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFR--GGSRGGFRGR 193
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.5 bits (78), Expect = 0.014
Identities = 26/115 (22%), Positives = 30/115 (26%), Gaps = 2/115 (1%)
Frame = +3
Query: 693 PAXXPPGXGXXXXSPXXXHVXXAAPSTHPTRXXDPXPHPXXXXLTP--GXATXPPXXPXA 866
P+ PP P A P P+ P P P P A P P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 867 PPAXPRXXPXXPPXXXAXXTXKFPAPXXXXPRXPXPPPXXXXLASPXXXPXPXXP 1031
P P+ PP P P P P P + P P P
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Score = 32.3 bits (70), Expect = 0.13
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Frame = +1
Query: 826 PRAPXPXPPXTLXPPRPXLAXXRPPRP----XXPXRPLXNSPPPXXXAXAXPXHPPXXXX 993
P + P P PP P L+ PP P P P+ ++ PP + P P
Sbjct: 999 PVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSG 1058
Query: 994 SPHR-XXXXLPXXHTPATRXPXXXPP 1068
+P P P+ P PP
Sbjct: 1059 APSAPPPVPAPSSEIPSIPAPSGAPP 1084
Score = 30.7 bits (66), Expect = 0.39
Identities = 23/107 (21%), Positives = 29/107 (27%), Gaps = 3/107 (2%)
Frame = +3
Query: 693 PAXXPPGXGXXXXSPXXXHVXXAAPSTHPTRXXDPXPHPXXXXLT---PGXATXPPXXPX 863
P+ PP +P A P P+ P P P P P P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195
Query: 864 APPAXPRXXPXXPPXXXAXXTXKFPAPXXXXPRXPXPPPXXXXLASP 1004
P P+ PP P P P P P + +P
Sbjct: 1196 EAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 29.9 bits (64), Expect = 0.68
Identities = 22/79 (27%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Frame = +1
Query: 832 APXPXPPXTLXPPRPXLAXXRPPRPXXPXRPLXNSPP-PXXXAXAXPXHPPXXXXSPHRX 1008
A P P + PP P + PP P P PP P A P PP +
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVPA----PSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Query: 1009 XXXLPXXHTPATRXPXXXP 1065
+P P+T P P
Sbjct: 1204 SVGVPPVPPPSTAPPVPTP 1222
Score = 29.1 bits (62), Expect = 1.2
Identities = 21/79 (26%), Positives = 25/79 (31%)
Frame = +1
Query: 832 APXPXPPXTLXPPRPXLAXXRPPRPXXPXRPLXNSPPPXXXAXAXPXHPPXXXXSPHRXX 1011
AP P PP P + PP P +P PP + A P P P
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPVP----KPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Query: 1012 XXLPXXHTPATRXPXXXPP 1068
P TP+ P P
Sbjct: 1214 STAPPVPTPSAGLPPVPVP 1232
Score = 28.7 bits (61), Expect = 1.6
Identities = 25/116 (21%), Positives = 29/116 (25%), Gaps = 3/116 (2%)
Frame = +3
Query: 693 PAXXPPGXGXXXXSPXXXHVXXAAPSTHPTRXXDPXPHPXXXXL---TPGXATXPPXXPX 863
P+ PP +P A P P P P P A P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147
Query: 864 APPAXPRXXPXXPPXXXAXXTXKFPAPXXXXPRXPXPPPXXXXLASPXXXPXPXXP 1031
A P P P + PAP P P P + P P P
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 26.2 bits (55), Expect = 8.4
Identities = 18/81 (22%), Positives = 22/81 (27%)
Frame = +1
Query: 826 PRAPXPXPPXTLXPPRPXLAXXRPPRPXXPXRPLXNSPPPXXXAXAXPXHPPXXXXSPHR 1005
P P P T PP P + P P P P + A P P +
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK 1096
Query: 1006 XXXXLPXXHTPATRXPXXXPP 1068
P P+ P P
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAP 1117
Score = 26.2 bits (55), Expect = 8.4
Identities = 21/91 (23%), Positives = 25/91 (27%), Gaps = 5/91 (5%)
Frame = +3
Query: 765 PSTHPTRXXDPXPHPXXXXLTPGXATXPPXXPX--APPAXPRXXPXXPPXXXAXXTXKFP 938
P P+ P P P + PP A P P+ PP P
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124
Query: 939 APXXXXPRXPXP---PPXXXXLASPXXXPXP 1022
P P P P PP + P P
Sbjct: 1125 KPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP 1155
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.032
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 829 RAPXPXPPXTLXP-PRPXLAXXRPPRPXXPXRPLXNSPPPXXXAXAXPXHPP 981
++P P PP + P P P PP P P PPP A A P PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP--PPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +3
Query: 870 PAXPRXXPXXPPXXXAXXTXKFPAPXXXXPRXPXPPPXXXXLASPXXXPXP 1022
P P P A PAP P P PPP P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 777 PTRXXDPXPHPXXXXLTPGXATXPPXXPXAPPAXPRXXPXXPPXXXAXXTXKF-PAP 944
PT P P P + G PP P A P P PP A + + PAP
Sbjct: 742 PTPAPAPIPVPPPAPIM-GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.13
Identities = 26/90 (28%), Positives = 28/90 (31%), Gaps = 1/90 (1%)
Frame = +3
Query: 693 PAXXPPGXGXXXXSPXXXHVXXAAPSTHPTRXXDPXPHPXXXXLTPGXATXPPXXPXAPP 872
PA P G +P PS P+ P P P PP P APP
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPS--LPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Query: 873 AXPRXXPXXPPXXXAXXT-XKFPAPXXXXP 959
P P PP A PAP P
Sbjct: 459 -LPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 30.3 bits (65), Expect = 0.52
Identities = 20/76 (26%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Frame = +3
Query: 807 PXXXXLTPGXATXPPXXPXAPPAXPRXXPXXPPXXXAXXTXKFPAPXXXXPRXPXPPPXX 986
P L T P P P P P PP PA P P PP
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Query: 987 XXL-ASPXXXPXPXXP 1031
+ A+P P P
Sbjct: 461 AGMPAAPPLPPAAPAP 476
Score = 29.5 bits (63), Expect = 0.90
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Frame = +1
Query: 841 PXPPXTLXPPRPXLAXXRPPRPXXPXRPLXN--SPPPXXXAXAXPXHPPXXXXSPHRXXX 1014
P PP PPR + R P P R + N +PPP + P PP S
Sbjct: 361 PPPP----PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNAS----RT 412
Query: 1015 XLPXXHTPATRXPXXXP--PP 1071
P TP + P P PP
Sbjct: 413 STPPVPTPPSLPPSAPPSLPP 433
Score = 28.7 bits (61), Expect = 1.6
Identities = 28/108 (25%), Positives = 34/108 (31%), Gaps = 2/108 (1%)
Frame = +3
Query: 663 PLXXXATXXXPAXXPPGXGXXXXSPXXXHVXXAAPSTHPTRXXDPXPHPXXXXLTPGXA- 839
PL P PP +P + A+ ++ P P P P A
Sbjct: 378 PLSSSRAVSNPPAPPPAI-PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436
Query: 840 -TXPPXXPXAPPAXPRXXPXXPPXXXAXXTXKFPAPXXXXPRXPXPPP 980
+ P P APP P P PP PA P P PPP
Sbjct: 437 PSLPMGAPAAPPLPP-SAPIAPPLPAG-----MPAAPPLPPAAPAPPP 478
Score = 27.9 bits (59), Expect = 2.8
Identities = 23/84 (27%), Positives = 26/84 (30%), Gaps = 5/84 (5%)
Frame = +1
Query: 835 PXPXPPXTLXP---PRPXLAXXRPPRPXXPXRP-LXNSPPPXXXAXAXPXHPPXXXXSPH 1002
P P PP + P P PP P P PPP + A P P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 1003 RXXXXL-PXXHTPATRXPXXXPPP 1071
R L P + T P PP
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPP 421
Score = 26.6 bits (56), Expect = 6.4
Identities = 23/85 (27%), Positives = 25/85 (29%), Gaps = 6/85 (7%)
Frame = +3
Query: 795 PXPHPXXXXLTPGXATXPPXXPXA-PPAXPRXXP----XXPPXXXAXXTXKFPAPXXXXP 959
P P P G PP A PP PR P PP + PAP P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 960 RXPXPP-PXXXXLASPXXXPXPXXP 1031
P P + P P P
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPP 421
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.5 bits (68), Expect = 0.22
Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Frame = +1
Query: 826 PRAPXPXPPXTLXPPRPXLAXXRP---PRPXXPXRPLXNSPPPXXXAXAXPXHPPXXXXS 996
PR P P PP P A P P P P P+ + P A P PP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Query: 997 P 999
P
Sbjct: 205 P 205
Score = 29.5 bits (63), Expect = 0.90
Identities = 20/75 (26%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Frame = +3
Query: 762 APSTHPTRXXDPXPHPXXXXLTP-GXATXPPXXPXAPPAXPRXXPXXPPXXXAXXTXKFP 938
AP T + P P + P A+ PP APP P P P
Sbjct: 129 APPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
Query: 939 A-PXXXXPRXPXPPP 980
+ P P P PP
Sbjct: 189 SLPSAVPPMPPKVPP 203
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 30.7 bits (66), Expect = 0.39
Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Frame = +1
Query: 847 PPXTLXPPRPXLAXXRPPRPXXPXRPLXNSPPPXXXAXAXPXHPPXXXXSPHRXXXX-LP 1023
PP + PP P P P PPP A + P S R +P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPP--PPPPPAVEDQAADANEPDDYYSSGRAVSPEIP 224
Query: 1024 XXHTPATRXPXXXPPP 1071
+TP P PPP
Sbjct: 225 PTYTPKQADPLPAPPP 240
Score = 26.2 bits (55), Expect = 8.4
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +1
Query: 832 APXPXPPXTLXPPRPXLA-XXRPPRPXXPXRPLXNSPPPXXXAXAXPXHPP 981
AP P PP TL P + P R N PPP + P PP
Sbjct: 237 APPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPP-PATPSQPPRPP 286
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.52
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +1
Query: 832 APXPXPPXTLXPPRPXLAXXRPPRPXXPXRPLXNSPPPXXXAXAXPXHP 978
AP P PP PP P PP P P ++PPP A + P P
Sbjct: 1704 APTPPPPPMSVPPPP----SAPPMPAGP----PSAPPPPLPASSAPSVP 1744
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 870 PAXPRXXPXXPPXXXAXXTXKFPAPXXXXPRXPXPPPXXXXLASPXXXPXPXXP 1031
PA P P P A P P P PP A P P P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/71 (28%), Positives = 23/71 (32%)
Frame = +1
Query: 841 PXPPXTLXPPRPXLAXXRPPRPXXPXRPLXNSPPPXXXAXAXPXHPPXXXXSPHRXXXXL 1020
P P + P RP A PP+ P PPP P PP P L
Sbjct: 1683 PAHPVSTPPVRPQSAA--PPQMSAP-----TPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
Query: 1021 PXXHTPATRXP 1053
P P+ P
Sbjct: 1736 PASSAPSVPNP 1746
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.9 bits (64), Expect = 0.68
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 935 EFXSGRXGXXGRGGRXXARXGRGGXRVXGGXGXG-ARGQXG 816
+F + R G RGGR GRGG GG G G RG+ G
Sbjct: 439 DFSTPRTGGGSRGGR-GGFGGRGGFGGRGGFGGGRGRGRGG 478
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +1
Query: 817 PX*PRAPXPXPPXTLXPPRPXLAXXRPPRPXXPXRPLXNSPPP 945
P P P P P PP P P P P PL N P P
Sbjct: 107 PPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEP--PLPNEPVP 147
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.1 bits (62), Expect = 1.2
Identities = 23/88 (26%), Positives = 23/88 (26%), Gaps = 3/88 (3%)
Frame = +1
Query: 817 PX*PRAPX-PXPPXTLXPPRPXLAXXRPPRPXXPXRPLXNSPPPXXXAXAXPXHP--PXX 987
P P AP P PP P RP P P P PP P P P
Sbjct: 596 PVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAV 655
Query: 988 XXSPHRXXXXLPXXHTPATRXPXXXPPP 1071
P P P PP
Sbjct: 656 PVVPEAPSVPQPPAAPVVPEVPSVPQPP 683
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = +1
Query: 817 PX*PRAPXPXPPXTLXPPRPXLAXXRPPRPXXPXRPLXN--SPPPXXXAXAXPXHPP 981
P P P PP T PP L PP P P P N PP A P P
Sbjct: 484 PFIPGTSAPLPPTTFAPPGVPL----PPIPGAPGMPNLNMSQPPMVPPGMALPPGMP 536
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 28.3 bits (60), Expect = 2.1
Identities = 23/89 (25%), Positives = 24/89 (26%), Gaps = 3/89 (3%)
Frame = +1
Query: 826 PRAPXPXPPXTLXPPRPXL---AXXRPPRPXXPXRPLXNSPPPXXXAXAXPXHPPXXXXS 996
P P P PP P PP P PPP PP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 319
Query: 997 PHRXXXXLPXXHTPATRXPXXXPPPDQXH 1083
P P H P P PPP + H
Sbjct: 320 PGEHMPPPPMHHEPGEHMP---PPPFKHH 345
Score = 26.2 bits (55), Expect = 8.4
Identities = 22/85 (25%), Positives = 22/85 (25%), Gaps = 3/85 (3%)
Frame = +1
Query: 826 PRAPXPXPPXTLXPPRPXL---AXXRPPRPXXPXRPLXNSPPPXXXAXAXPXHPPXXXXS 996
P P P PP P PP P PPP PP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 267
Query: 997 PHRXXXXLPXXHTPATRXPXXXPPP 1071
P P H P P PPP
Sbjct: 268 PGEHMPPPPMHHEPGEHMP---PPP 289
Score = 26.2 bits (55), Expect = 8.4
Identities = 22/85 (25%), Positives = 22/85 (25%), Gaps = 3/85 (3%)
Frame = +1
Query: 826 PRAPXPXPPXTLXPPRPXL---AXXRPPRPXXPXRPLXNSPPPXXXAXAXPXHPPXXXXS 996
P P P PP P PP P PPP PP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 280
Query: 997 PHRXXXXLPXXHTPATRXPXXXPPP 1071
P P H P P PPP
Sbjct: 281 PGEHMPPPPMHHEPGEHMP---PPP 302
Score = 26.2 bits (55), Expect = 8.4
Identities = 22/85 (25%), Positives = 22/85 (25%), Gaps = 3/85 (3%)
Frame = +1
Query: 826 PRAPXPXPPXTLXPPRPXL---AXXRPPRPXXPXRPLXNSPPPXXXAXAXPXHPPXXXXS 996
P P P PP P PP P PPP PP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 293
Query: 997 PHRXXXXLPXXHTPATRXPXXXPPP 1071
P P H P P PPP
Sbjct: 294 PGEHMPPPPMHHEPGEHMP---PPP 315
Score = 26.2 bits (55), Expect = 8.4
Identities = 22/85 (25%), Positives = 22/85 (25%), Gaps = 3/85 (3%)
Frame = +1
Query: 826 PRAPXPXPPXTLXPPRPXL---AXXRPPRPXXPXRPLXNSPPPXXXAXAXPXHPPXXXXS 996
P P P PP P PP P PPP PP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 306
Query: 997 PHRXXXXLPXXHTPATRXPXXXPPP 1071
P P H P P PPP
Sbjct: 307 PGEHMPPPPMHHEPGEHMP---PPP 328
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 914 GXXGRGGRXXARXGRGG 864
G GRGGR R GRGG
Sbjct: 570 GGNGRGGRYSGRGGRGG 586
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,340
Number of Sequences: 5004
Number of extensions: 12664
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 603631146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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