Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A19
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...   156   3e-39
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...   128   7e-31
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    27   4.4  
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...    27   4.4  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   5.8  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   7.6  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   7.6  

>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score =  156 bits (379), Expect = 3e-39
 Identities = 76/148 (51%), Positives = 105/148 (70%), Gaps = 2/148 (1%)
 Frame = +2

Query: 311 EKEFKGFKTLFXRFLAE--QGPSVTWEKIEKLPEGAVIDYNSLSTPTTDNVHHMLDKLVV 484
           +KE   F +LF R+L E  +G  + W+ +E      V++Y+++ T         L+KL V
Sbjct: 54  QKEMDNFFSLFSRYLQEDARGSEINWDLVESPKPEQVVEYDTI-TEAGGLSRDYLNKLAV 112

Query: 485 VKLNGGLGTSMGCKGPKSVIQVRNDLTFLDLTVQQIEHLNKTYKCNVPLVLMNSFNTDED 664
           +KLNGGLGT+MGC GPKS+I+VR+  +FLDL+V+QIEHLN+ Y  NVP VLMNSFNTDE 
Sbjct: 113 LKLNGGLGTTMGCVGPKSIIEVRDGNSFLDLSVRQIEHLNRKYNVNVPFVLMNSFNTDEA 172

Query: 665 TQKVIRXYKGLKLDIHTFNQSCHPRINR 748
           T KVI+ Y+  K+DI TFNQS +PR+++
Sbjct: 173 TAKVIKKYEAHKIDILTFNQSRYPRVHK 200


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score =  128 bits (310), Expect = 7e-31
 Identities = 62/144 (43%), Positives = 95/144 (65%), Gaps = 2/144 (1%)
 Frame = +2

Query: 317 EFKGFKTLFXRFLAE--QGPSVTWEKIEKLPEGAVIDYNSLSTPTTDNVHHMLDKLVVVK 490
           +   F  L+ R+L    +G    W+ I  L    +IDY  L  P   N    L++L VVK
Sbjct: 50  QMDNFFALYRRYLLHTVKGYECDWDSIRPLGPEDMIDYGDL--PLCKNAGKYLNRLAVVK 107

Query: 491 LNGGLGTSMGCKGPKSVIQVRNDLTFLDLTVQQIEHLNKTYKCNVPLVLMNSFNTDEDTQ 670
           LNGG+G ++G   PK++I+VR++ +FLDL+++QIE+LN+ Y  +VP +LMNS++T+++T 
Sbjct: 108 LNGGMGNALGVNYPKAMIEVRDNQSFLDLSIRQIEYLNRRYDVSVPFILMNSYDTNDETC 167

Query: 671 KVIRXYKGLKLDIHTFNQSCHPRI 742
           KV+R Y G K+DI TF QS +PR+
Sbjct: 168 KVLRKYAGCKIDISTFEQSRYPRV 191


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 542 SRIWGPYSPWMYPGLR 495
           S +WGPY P +Y G+R
Sbjct: 41  SFLWGPYRPNLYVGIR 56


>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 164 NIHDHSDSVPTNKPEA-TFIFQKKYLARM*DARSYSQRVTLSXLKD 30
           ++ D   S+  +  +A T  F  KYLA+   A   + RVTLS   D
Sbjct: 187 DLSDQDQSIEISLTQAVTLTFSLKYLAQFTKATPLATRVTLSMSND 232


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 666 VSSSVLKEFIRTSGTLHLYVLFKCSICCTVRSRKVRSFRTWITDL 532
           +S+  L    R   T HL VL  C IC   +  K  + +   TD+
Sbjct: 206 LSTRWLDRITRFYATFHLIVLVVCMICLLAKCPKFNTGKYVFTDV 250


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 376 DMGENREASRRSCNRLQQSVH 438
           ++G N  AS R CNR++++++
Sbjct: 291 NLGPNYRASTRKCNRIKEAIN 311


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 120 SHFYFSKKIFGANVRRALIQPT 55
           +HFY++ K+F A V      PT
Sbjct: 301 NHFYYNTKLFAAKVHHLFDDPT 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,405,343
Number of Sequences: 5004
Number of extensions: 69987
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)