Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A19
         (841 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)                179   2e-45
SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_14568| Best HMM Match : Col_cuticle_N (HMM E-Value=6.1)             29   3.6  
SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9)                    29   4.7  

>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
          Length = 427

 Score =  179 bits (436), Expect = 2e-45
 Identities = 85/143 (59%), Positives = 102/143 (71%)
 Frame = +2

Query: 314 KEFKGFKTLFXRFLAEQGPSVTWEKIEKLPEGAVIDYNSLSTPTTDNVHHMLDKLVVVKL 493
           KE   FK LF R+L E GPSV WEKI   P+G V++Y+ +S     ++   LDKLVV+KL
Sbjct: 210 KEMNNFKGLFKRYLQETGPSVVWEKIHPPPKGLVVNYDEVSHAEPADIKAALDKLVVIKL 269

Query: 494 NGGLGTSMGCKGPKSVIQVRNDLTFLDLTVQQIEHLNKTYKCNVPLVLMNSFNTDEDTQK 673
           NGGLGT+MG  GPKS+I V  +LTFLDL +QQIEHLN  Y  NVPLVLMNSFNT E+T K
Sbjct: 270 NGGLGTTMGLVGPKSLISVTQELTFLDLNIQQIEHLNNKYGSNVPLVLMNSFNTHEETVK 329

Query: 674 VIRXYKGLKLDIHTFNQSCHPRI 742
            +R Y  + + IH FNQS HPRI
Sbjct: 330 TLRKYGAVNVRIHCFNQSGHPRI 352



 Score = 35.5 bits (78), Expect = 0.054
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 196 HQGSRDFKXATKRDALARLEVELEKLISTAPXNQAFAARERVQRLQDALXQILG*TG 366
           H   + FK  +++DA  R+E E+ KLI  AP  Q   A + +   +    + L  TG
Sbjct: 171 HVNVQQFKSLSRKDAFERMETEINKLIEFAPAPQKDLASKEMNNFKGLFKRYLQETG 227


>SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = +2

Query: 485 VKLNGGLGTSMGCKGPKSVIQVRNDLTFLDLTVQQIEHLNKTYKCNVPLVLMNSFNTDED 664
           V+  GG+ T       +SV+Q    L F+ +     + LN+T KC +  V+  ++ T   
Sbjct: 243 VETKGGIFTLRNIYLTQSVLQAMFSLVFIGVDAGYHKKLNQTIKCEIDEVISENY-TYFK 301

Query: 665 TQKVIRXYKGLKLDIH 712
              VI  Y  + L I+
Sbjct: 302 CSNVISQYFWVTLVIY 317


>SB_14568| Best HMM Match : Col_cuticle_N (HMM E-Value=6.1)
          Length = 70

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 271 ASPAPPPVER-GHHVWWPP*SHEXP 200
           ASP PPPV+  GH   WPP S   P
Sbjct: 46  ASPPPPPVQIIGHTFVWPPASAPAP 70


>SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9)
          Length = 554

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -2

Query: 831 EVSVTPVITRIQYRLEHHRXERWATVTPLLIRGWQD 724
           EV V+PV T  Q R   HR    A V   L+RGW D
Sbjct: 378 EVDVSPV-TAAQIRNWTHRDPVLANVKEYLLRGWPD 412


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,668,071
Number of Sequences: 59808
Number of extensions: 575945
Number of successful extensions: 1382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)