Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A19
         (841 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17310.2 68418.m02028 UTP--glucose-1-phosphate uridylyltransf...   165   3e-41
At3g03250.1 68416.m00321 UTP--glucose-1-phosphate uridylyltransf...   163   2e-40
At5g17310.1 68418.m02027 UTP--glucose-1-phosphate uridylyltransf...   100   2e-21
At2g35020.1 68415.m04296 UTP--glucose-1-phosphate uridylyltransf...    33   0.31 
At3g27470.1 68416.m03433 expressed protein contains Pfam profile...    31   1.3  
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains...    29   2.9  
At1g12930.1 68414.m01501 importin-related similar to late gestat...    28   6.7  

>At5g17310.2 68418.m02028 UTP--glucose-1-phosphate
           uridylyltransferase, putative / UDP-glucose
           pyrophosphorylase, putative / UGPase, putative strong
           similarity to SP|P19595 UTP--glucose-1-phosphate
           uridylyltransferase (EC 2.7.7.9) (UDP-glucose
           pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
           contains Pfam profile PF01704: UTP--glucose-1-phosphate
           uridylyltransferase
          Length = 470

 Score =  165 bits (401), Expect = 3e-41
 Identities = 78/146 (53%), Positives = 102/146 (69%), Gaps = 2/146 (1%)
 Frame = +2

Query: 311 EKEFKGFKTLFXRFLAEQGPSVTWEKIEKLPEGAVIDYNSLSTPTTD--NVHHMLDKLVV 484
           E E  GF  L  R+L+ +   + W KI+   +  V+ Y+ ++  + D     ++LDKLVV
Sbjct: 24  ENEKSGFINLVSRYLSGEAQHIEWSKIQTPTDEIVVPYDKMANVSEDASETKYLLDKLVV 83

Query: 485 VKLNGGLGTSMGCKGPKSVIQVRNDLTFLDLTVQQIEHLNKTYKCNVPLVLMNSFNTDED 664
           +KLNGGLGT+MGC GPKSVI+VR+ LTFLDL V QIE+LN  Y C VPLVLMNSFNT +D
Sbjct: 84  LKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYNCKVPLVLMNSFNTHDD 143

Query: 665 TQKVIRXYKGLKLDIHTFNQSCHPRI 742
           TQK++  Y    +DIHTFNQS +PR+
Sbjct: 144 TQKIVEKYTKSNVDIHTFNQSKYPRV 169


>At3g03250.1 68416.m00321 UTP--glucose-1-phosphate
           uridylyltransferase, putative / UDP-glucose
           pyrophosphorylase, putative / UGPase, putative strong
           similarity to SP|P19595 UTP--glucose-1-phosphate
           uridylyltransferase (EC 2.7.7.9) (UDP-glucose
           pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
           contains Pfam profile PF01704: UTP--glucose-1-phosphate
           uridylyltransferase
          Length = 469

 Score =  163 bits (395), Expect = 2e-40
 Identities = 79/147 (53%), Positives = 103/147 (70%), Gaps = 3/147 (2%)
 Frame = +2

Query: 311 EKEFKGFKTLFXRFLAEQGPSVTWEKIEKLPEGAVIDYNSLSTPTTDNV---HHMLDKLV 481
           E E  GF +L  R+L+ +   + W KI+   +  V+ Y  + TP + +V    ++LDKLV
Sbjct: 23  ESEKSGFISLVSRYLSGEAQHIEWSKIQTPTDEIVVPYEKM-TPVSQDVAETKNLLDKLV 81

Query: 482 VVKLNGGLGTSMGCKGPKSVIQVRNDLTFLDLTVQQIEHLNKTYKCNVPLVLMNSFNTDE 661
           V+KLNGGLGT+MGC GPKSVI+VR+ LTFLDL V QIE+LN  Y C VPLVLMNSFNT +
Sbjct: 82  VLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHD 141

Query: 662 DTQKVIRXYKGLKLDIHTFNQSCHPRI 742
           DT K++  Y    +DIHTFNQS +PR+
Sbjct: 142 DTHKIVEKYTNSNVDIHTFNQSKYPRV 168


>At5g17310.1 68418.m02027 UTP--glucose-1-phosphate
           uridylyltransferase, putative / UDP-glucose
           pyrophosphorylase, putative / UGPase, putative strong
           similarity to SP|P19595 UTP--glucose-1-phosphate
           uridylyltransferase (EC 2.7.7.9) (UDP-glucose
           pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
           contains Pfam profile PF01704: UTP--glucose-1-phosphate
           uridylyltransferase
          Length = 390

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 45/70 (64%), Positives = 55/70 (78%)
 Frame = +2

Query: 533 KSVIQVRNDLTFLDLTVQQIEHLNKTYKCNVPLVLMNSFNTDEDTQKVIRXYKGLKLDIH 712
           +SVI+VR+ LTFLDL V QIE+LN  Y C VPLVLMNSFNT +DTQK++  Y    +DIH
Sbjct: 20  RSVIEVRDGLTFLDLIVIQIENLNNKYNCKVPLVLMNSFNTHDDTQKIVEKYTKSNVDIH 79

Query: 713 TFNQSCHPRI 742
           TFNQS +PR+
Sbjct: 80  TFNQSKYPRV 89


>At2g35020.1 68415.m04296 UTP--glucose-1-phosphate
           uridylyltransferase family protein similar to SP|Q16222
           UDP-N-acetylhexosamine pyrophosphorylase (Antigen X)
           {Homo sapiens}; contains Pfam profile PF01704:
           UTP--glucose-1-phosphate uridylyltransferase
          Length = 502

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
 Frame = +2

Query: 473 KLVVVKLNGGLGTSMGCKGPKSV-------------IQVRNDLTFLDLTVQQIEHLNKTY 613
           KL VV L+GG GT +G   PK               IQ    L    L  Q +   + T 
Sbjct: 124 KLGVVLLSGGQGTRLGSSDPKGCYNIGLPSGKSLFQIQAERILCVQRLASQAMSEASPTR 183

Query: 614 KCNVPLVLMNSFNTDEDTQKVIRXYK--GLKLDIHTFNQ 724
              +   +M S  T E TQK  + +K  GL+ D  TF Q
Sbjct: 184 PVTIQWYIMTSPFTHEPTQKFFKSHKYFGLEPDQVTFFQ 222


>At3g27470.1 68416.m03433 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 398

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 561 RSFRTWITDLGPLQPMDVPRPPLSFTTTNLSSIWWTLSVVGVDRLL*SITAPSGSF 394
           R F +W +  G     D+P PP ++  T    IW + +  G +RL   I  P   F
Sbjct: 62  RLFGSWSSTKGLKLKNDIPDPPYNYNDT---KIWVSTNPRGAERLPPDIVTPESDF 114


>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 954

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 663 SSSVLKEFIRTSGTLHLYVLF--KCSICCTVRSRKVRSFRTWITDLGP 526
           +S +L  +I  +  + LYVL   KC+ C T+   K  S R+W   + P
Sbjct: 646 TSDLLHRYIMRTQQMPLYVLLNIKCTRCRTLLVEKQESLRSWHHKIPP 693


>At1g12930.1 68414.m01501 importin-related similar to late gestation
           lung 2 protein (GI:7274209) {Rattus norvegicus}; similar
           to Ran binding protein 13 (importin 13)) (GI:8133102)
           {Homo sapiens}; contains weak hit to  Pfam PF03810:
           Importin-beta N-terminal domain
          Length = 1005

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 648 KEFIRTSGTLHLYVLFKCSICCTVRSR 568
           KE + TSGTL      K +ICCT   R
Sbjct: 798 KELLGTSGTLLEISFHKAAICCTAMHR 824


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,608,897
Number of Sequences: 28952
Number of extensions: 409233
Number of successful extensions: 1148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)