Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A17
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   143   3e-35
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   143   3e-35
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    29   1.2  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   6.2  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   8.2  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  143 bits (346), Expect = 3e-35
 Identities = 71/92 (77%), Positives = 79/92 (85%)
 Frame = +3

Query: 486 QVLVTAIINSGPREDSTRIGRAGTVRRXAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTI 665
           QVLV A+   GPREDSTRIG AGTVRR AVDVSPLRRVNQA+ L+  GAREAAF N+K+I
Sbjct: 109 QVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSI 168

Query: 666 AECVADXXINAAKGXSNSYAIKKKDELERVAK 761
           +EC+A+  INAAKG SNSYAIKKKDELERVAK
Sbjct: 169 SECLAEEIINAAKGSSNSYAIKKKDELERVAK 200



 Score =  111 bits (267), Expect = 1e-25
 Identities = 59/93 (63%), Positives = 69/93 (74%)
 Frame = +2

Query: 206 IKLFGXWSCYXVXVSDMSLQXYISVKXXYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 385
           IKLF  +    V V D+SL  YI++     + LPH+AGR+  KRFRKA+C IVERLTNSL
Sbjct: 18  IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75

Query: 386 MMHGRNNGKKLMAVRIVKXAFEIIHLLTGXNPL 484
           MM+GRNNGKKL+A RIVK AFEII LLT  NPL
Sbjct: 76  MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPL 108


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  143 bits (346), Expect = 3e-35
 Identities = 71/92 (77%), Positives = 79/92 (85%)
 Frame = +3

Query: 486 QVLVTAIINSGPREDSTRIGRAGTVRRXAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTI 665
           QVLV A+   GPREDSTRIG AGTVRR AVDVSPLRRVNQA+ L+  GAREAAF N+K+I
Sbjct: 109 QVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSI 168

Query: 666 AECVADXXINAAKGXSNSYAIKKKDELERVAK 761
           +EC+A+  INAAKG SNSYAIKKKDELERVAK
Sbjct: 169 SECLAEEIINAAKGSSNSYAIKKKDELERVAK 200



 Score =  111 bits (268), Expect = 1e-25
 Identities = 63/108 (58%), Positives = 74/108 (68%), Gaps = 3/108 (2%)
 Frame = +2

Query: 170 TXSLPQAADIPE---IKLFGXWSCYXVXVSDMSLQXYISVKXXYAKYLPHSAGRYAHKRF 340
           T SL     + E   IKLF  +    V V D+SL  YI++     + LPH+AGR+  KRF
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60

Query: 341 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKXAFEIIHLLTGXNPL 484
           RKA+C IVERLTNSLMM+GRNNGKKL+A RIVK AFEII LLT  NPL
Sbjct: 61  RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPL 108


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 362 VERLTNSLMMHGRNNGKKLMAVRIVKXAFEIIHLLTGXNPL 484
           V+ L N +M     +GKK  A +IV  A  II   TG NP+
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPI 162


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 370 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRXPSGKY 492
           PYK+   +  + W +  G+TY  + +  + L   R  +  Y
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRETASTY 178


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 514 LDPVKIRLGSVVRVQFVVXPLMFHPCAESTKQSGFCAQV 630
           ++PV  R  SVV    V  P+ +H   +S  ++G   Q+
Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,204
Number of Sequences: 5004
Number of extensions: 45916
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)