Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_A17
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 155 4e-38
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 155 4e-38
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 32 0.70
11_02_0083 - 8116997-8117590,8118342-8118745,8119073-8119671,812... 30 2.1
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 29 4.9
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 6.5
02_04_0259 - 21345100-21345891,21347081-21347516,21347602-21348161 28 8.6
01_01_0115 - 856957-858055,858479-858538,858802-859583 28 8.6
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 155 bits (376), Expect = 4e-38
Identities = 76/92 (82%), Positives = 83/92 (90%)
Frame = +3
Query: 486 QVLVTAIINSGPREDSTRIGRAGTVRRXAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTI 665
QV+V AIINSGPRED+TRIG AG VRR AVD+SPLRRVNQAI+LL TGARE+AF NIKTI
Sbjct: 105 QVIVDAIINSGPREDATRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTI 164
Query: 666 AECVADXXINAAKGXSNSYAIKKKDELERVAK 761
AEC+AD INAAKG SNSYAIKKKDE+ERVAK
Sbjct: 165 AECLADELINAAKGSSNSYAIKKKDEIERVAK 196
Score = 140 bits (339), Expect = 1e-33
Identities = 67/95 (70%), Positives = 77/95 (81%), Gaps = 1/95 (1%)
Frame = +2
Query: 203 EIKLFGXWSCYXVXVSDMSLQXYISVKXX-YAKYLPHSAGRYAHKRFRKAQCPIVERLTN 379
E+KLF WS V V+D+SL Y++V +A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 380 SLMMHGRNNGKKLMAVRIVKXAFEIIHLLTGXNPL 484
SLMMHGRNNGKK+MAVRIVK A EIIHLLT NP+
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPI 104
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 155 bits (376), Expect = 4e-38
Identities = 76/92 (82%), Positives = 83/92 (90%)
Frame = +3
Query: 486 QVLVTAIINSGPREDSTRIGRAGTVRRXAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTI 665
QV+V AIINSGPRED+TRIG AG VRR AVD+SPLRRVNQAI+LL TGARE+AF NIKTI
Sbjct: 106 QVIVDAIINSGPREDATRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTI 165
Query: 666 AECVADXXINAAKGXSNSYAIKKKDELERVAK 761
AEC+AD INAAKG SNSYAIKKKDE+ERVAK
Sbjct: 166 AECLADELINAAKGSSNSYAIKKKDEIERVAK 197
Score = 137 bits (332), Expect = 1e-32
Identities = 65/94 (69%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Frame = +2
Query: 206 IKLFGXWSCYXVXVSDMSLQXYISVKXX-YAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 382
+KLF WS V V+D+SL Y++V +A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 383 LMMHGRNNGKKLMAVRIVKXAFEIIHLLTGXNPL 484
LMMHGRNNGKK+MAVRIVK A EIIHLLT NP+
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPI 105
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 646 NAASRAPVHKSQIAWLTRRKGETSTAXRRTVPARPILVESSRGPE 512
+A+SR P + +I RR+G + + RR+ P +P +R PE
Sbjct: 50 HASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94
>11_02_0083 -
8116997-8117590,8118342-8118745,8119073-8119671,
8120226-8120266
Length = 545
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 609 IWLLCTGAREAAFXNIKTIAECVADXXINAAKGXSNSYAIKK-KDELERVAKIXPLKYTI 785
IW LC G+ A N ++ + AA +A K+ DEL R K YT
Sbjct: 333 IWQLCLGSERAKTLNWNEVSMLMTKADPEAATTLHRQFARKRLTDELARNVKSLTQTYTS 392
Query: 786 KSSL 797
+SL
Sbjct: 393 NTSL 396
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 385 NDARSEQWQKTDGRTYCQTCV*NYSLVNWRXPSGKYS*LPLSTLD 519
N+ ++ WQ T GRT Q C + N R +Y+ +PL +
Sbjct: 1594 NNYQALGWQATAGRTSMQRCAASTQWFNERISLARYAHVPLGNFE 1638
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 616 SQIAWLTRRKGETSTAXRRTVPARPILVESSRGPELIMAVTSTCQRVXSS 467
SQ+ + R G + R VPA P ++ G +L A ++C+ V +S
Sbjct: 96 SQLVYDHGRHGVAAAGMMRRVPAFPPQAAAAAGHQLATATDTSCESVVTS 145
>02_04_0259 - 21345100-21345891,21347081-21347516,21347602-21348161
Length = 595
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 498 SRVLARGXSPVNK*IISNAXLTIRTAISFLPLFRPC 391
+RVL RG SP+ + + + AI++LPL+R C
Sbjct: 512 TRVLRRGASPIR---LHDLPEPMALAIAYLPLYRAC 544
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 257 SLQXYISVKXXYAKYLPHSAGRY 325
+LQ ++SV+ +A +PH+AGR+
Sbjct: 12 ALQVFVSVQFVFAVLVPHAAGRH 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,233,146
Number of Sequences: 37544
Number of extensions: 318375
Number of successful extensions: 575
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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