Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A17
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               169   3e-42
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    30   2.2  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 29   6.6  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           28   8.8  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  169 bits (411), Expect = 3e-42
 Identities = 83/92 (90%), Positives = 86/92 (93%)
 Frame = +3

Query: 486 QVLVTAIINSGPREDSTRIGRAGTVRRXAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTI 665
           QVLV AIINSGPREDSTRIGRAGTVRR AVDVSPLRRVNQAIWLLCTGARE+AF NIK+I
Sbjct: 178 QVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARESAFRNIKSI 237

Query: 666 AECVADXXINAAKGXSNSYAIKKKDELERVAK 761
           AEC+AD  INAAKG SNSYAIKKKDELERVAK
Sbjct: 238 AECLADELINAAKGSSNSYAIKKKDELERVAK 269



 Score =  161 bits (390), Expect = 9e-40
 Identities = 73/99 (73%), Positives = 84/99 (84%)
 Frame = +2

Query: 188 AADIPEIKLFGXWSCYXVXVSDMSLQXYISVKXXYAKYLPHSAGRYAHKRFRKAQCPIVE 367
           A ++P+IKLFG WS   V VSD+SL  YI+VK  Y+ YLPH+AGRYA KRFRKAQCPIVE
Sbjct: 79  APEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKRFRKAQCPIVE 138

Query: 368 RLTNSLMMHGRNNGKKLMAVRIVKXAFEIIHLLTGXNPL 484
           R+TNS+MMHGRNNGKKLM VRI+K +FEIIHLLTG NPL
Sbjct: 139 RITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPL 177



 Score = 35.5 bits (78), Expect = 0.058
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +2

Query: 188 AADIPEIKLFGXWSCYXVXVSDMSL 262
           A ++P+IKLFG WS   V VSD+SL
Sbjct: 16  APEVPDIKLFGKWSTEDVQVSDISL 40


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 698  CINXXICNTLCDCFNIXECSLTCTC 624
            C+N  +C+    C  +   SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 722 VGVRXTLSCINXXI--CNTLCDCFNIXECSLTCTCAQKPDCLVDS 594
           V +   LSC+N     C   C  ++  +C L+C      DC + S
Sbjct: 35  VAIDCRLSCVNYDAIDCRLSCVLYDAIDCRLSCVLYDALDCRLSS 79



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 722 VGVRXTLSCINXXI--CNTLCDCFNIXECSLTCTCAQKPDCLVDS 594
           V +   LSC+N     C   C  ++  +C L+C      DC + S
Sbjct: 179 VAIDCRLSCLNYDAIDCRLSCVLYDAIDCRLSCVLYDALDCRLSS 223


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -2

Query: 698 CINXXICNTLCDCFNIXECSLTCTCAQKPDCLVDSA 591
           C     C   C C     C   CTC Q   C+V SA
Sbjct: 220 CYVNLCCCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,289,269
Number of Sequences: 59808
Number of extensions: 378299
Number of successful extensions: 815
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)