Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A17
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   2.8  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   2.8  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   2.8  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   2.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   2.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.7  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 290 YAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 433
           Y KY   S  R   +  R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 56  YRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 290 YAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 433
           Y KY   S  R   +  R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 56  YRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 290 YAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 433
           Y KY   S  R   +  R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 56  YRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 290 YAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 433
           Y KY   S  R   +  R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 56  YRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 290 YAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 433
           Y KY   S  R   +  R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 289 YRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 338


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/40 (20%), Positives = 23/40 (57%)
 Frame = -3

Query: 532 ESSRGPELIMAVTSTCQRVXSS*QVNNFKRXFDNTYGHQF 413
           E+S+ P++I ++++  +    +   NN+   ++N Y + +
Sbjct: 74  ETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/40 (20%), Positives = 23/40 (57%)
 Frame = -3

Query: 532 ESSRGPELIMAVTSTCQRVXSS*QVNNFKRXFDNTYGHQF 413
           E+S+ P++I ++++  +    +   NN+   ++N Y + +
Sbjct: 74  ETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNY 113


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = -2

Query: 680 CNTLCDCFNIXECSLTCTCAQKPDCLVD 597
           C  LC C +   C    TC     C  D
Sbjct: 743 CFALCHCCDFDACDCEMTCPAGCKCYND 770


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,703
Number of Sequences: 438
Number of extensions: 3099
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)