Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A17
         (888 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   155   4e-38
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   154   6e-38
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   154   6e-38
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    28   7.2  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  155 bits (376), Expect = 4e-38
 Identities = 75/92 (81%), Positives = 83/92 (90%)
 Frame = +3

Query: 486 QVLVTAIINSGPREDSTRIGRAGTVRRXAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTI 665
           QV++ AI+NSGPRED+TRIG AG VRR AVD+SPLRRVNQAI+LL TGAREAAF NIKTI
Sbjct: 113 QVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTI 172

Query: 666 AECVADXXINAAKGXSNSYAIKKKDELERVAK 761
           AEC+AD  INAAKG SNSYAIKKKDE+ERVAK
Sbjct: 173 AECLADELINAAKGSSNSYAIKKKDEIERVAK 204



 Score =  136 bits (329), Expect = 2e-32
 Identities = 66/95 (69%), Positives = 77/95 (81%), Gaps = 1/95 (1%)
 Frame = +2

Query: 203 EIKLFGXWSCYXVXVSDMSLQXYISVKXX-YAKYLPHSAGRYAHKRFRKAQCPIVERLTN 379
           E+KLF  WS   V V+D+SL  YI V+   +A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77

Query: 380 SLMMHGRNNGKKLMAVRIVKXAFEIIHLLTGXNPL 484
           SLMMHGRNNGKKLMAVRIVK A EIIHLL+  NP+
Sbjct: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPI 112


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  154 bits (374), Expect = 6e-38
 Identities = 74/92 (80%), Positives = 83/92 (90%)
 Frame = +3

Query: 486 QVLVTAIINSGPREDSTRIGRAGTVRRXAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTI 665
           QV++ AI+NSGPRED+TRIG AG VRR AVD+SPLRRVNQAI+L+ TGAREAAF NIKTI
Sbjct: 113 QVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTI 172

Query: 666 AECVADXXINAAKGXSNSYAIKKKDELERVAK 761
           AEC+AD  INAAKG SNSYAIKKKDE+ERVAK
Sbjct: 173 AECLADELINAAKGSSNSYAIKKKDEIERVAK 204



 Score =  135 bits (327), Expect = 3e-32
 Identities = 67/101 (66%), Positives = 79/101 (78%), Gaps = 1/101 (0%)
 Frame = +2

Query: 185 QAADIPEIKLFGXWSCYXVXVSDMSLQXYISVKXX-YAKYLPHSAGRYAHKRFRKAQCPI 361
           Q A   E+KLF  W+   V V+D+SL  YI V+   +A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 362 VERLTNSLMMHGRNNGKKLMAVRIVKXAFEIIHLLTGXNPL 484
           VERLTNSLMMHGRNNGKKLMAVRIVK A EIIHLL+  NP+
Sbjct: 72  VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPI 112


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  154 bits (374), Expect = 6e-38
 Identities = 74/92 (80%), Positives = 83/92 (90%)
 Frame = +3

Query: 486 QVLVTAIINSGPREDSTRIGRAGTVRRXAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTI 665
           QV++ AI+NSGPRED+TRIG AG VRR AVD+SPLRRVNQAI+L+ TGAREAAF NIKTI
Sbjct: 113 QVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTI 172

Query: 666 AECVADXXINAAKGXSNSYAIKKKDELERVAK 761
           AEC+AD  INAAKG SNSYAIKKKDE+ERVAK
Sbjct: 173 AECLADELINAAKGSSNSYAIKKKDEIERVAK 204



 Score =  135 bits (327), Expect = 3e-32
 Identities = 67/101 (66%), Positives = 79/101 (78%), Gaps = 1/101 (0%)
 Frame = +2

Query: 185 QAADIPEIKLFGXWSCYXVXVSDMSLQXYISVKXX-YAKYLPHSAGRYAHKRFRKAQCPI 361
           Q A   E+KLF  W+   V V+D+SL  YI V+   +A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 362 VERLTNSLMMHGRNNGKKLMAVRIVKXAFEIIHLLTGXNPL 484
           VERLTNSLMMHGRNNGKKLMAVRIVK A EIIHLL+  NP+
Sbjct: 72  VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPI 112


>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 156 AWLWXPCLYHKPPTFLKSSFSAXGV 230
           +W W  CL+  P   LKS+ SA  V
Sbjct: 426 SWAWLTCLFFMPEMLLKSASSAYKV 450


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,439,618
Number of Sequences: 28952
Number of extensions: 251237
Number of successful extensions: 448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)