Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_A16
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 208 6e-55
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 112 7e-26
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 110 3e-25
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 86 5e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 56 7e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 55 2e-08
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 55 2e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 44 4e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.28
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 1.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 2.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.1
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 6.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 6.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 6.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 208 bits (509), Expect = 6e-55
Identities = 91/101 (90%), Positives = 95/101 (94%)
Frame = +3
Query: 162 DEEVAAXVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDPYVGDEAQSK 341
+EE+AA V+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMG KD YVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 342 RGILTLKYPIEHGIVTNWDDXEKIWHHTFYNELRVAPEEHP 464
RGILTLKYPIEHGIV NWDD EKIWHHTFYNELRVAPEEHP
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102
Score = 158 bits (384), Expect = 8e-40
Identities = 74/85 (87%), Positives = 78/85 (91%)
Frame = +1
Query: 451 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGD 630
P P LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYA GRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 631 GVSHTVPIYEGYALPHAILRLDLAG 705
GV+HTVPIYEGYALPHAI+RLDLAG
Sbjct: 158 GVTHTVPIYEGYALPHAIMRLDLAG 182
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +2
Query: 704 GRDLTDYLMKIXTERGXSFTT 766
GRDLTDYLMKI ERG +F+T
Sbjct: 182 GRDLTDYLMKILMERGYTFST 202
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 112 bits (269), Expect = 7e-26
Identities = 49/94 (52%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Frame = +3
Query: 186 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDPYVGDEAQSKRGILTLKY 365
+DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM KD +VG EAQ+ RG+L ++
Sbjct: 14 IDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQR 73
Query: 366 PIEHGIVTNWDDXEKIWHHTFYN-ELRVAPEEHP 464
PIE GI+ NW D E+IW + + + +L PEEHP
Sbjct: 74 PIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHP 107
Score = 96.3 bits (229), Expect = 5e-21
Identities = 42/85 (49%), Positives = 61/85 (71%)
Frame = +1
Query: 451 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGD 630
P P LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYA RTTGIVL+ GD
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGD 162
Query: 631 GVSHTVPIYEGYALPHAILRLDLAG 705
G++H+VPIY+G+++P AI + ++ G
Sbjct: 163 GLTHSVPIYDGFSIPSAIQQEEIGG 187
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 110 bits (264), Expect = 3e-25
Identities = 51/85 (60%), Positives = 63/85 (74%)
Frame = +1
Query: 451 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGD 630
PR LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGD
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Query: 631 GVSHTVPIYEGYALPHAILRLDLAG 705
GV+H VP+YE L H + RLD+AG
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDVAG 182
Score = 92.7 bits (220), Expect = 6e-20
Identities = 42/97 (43%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
Frame = +3
Query: 168 EVAAXVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGXKDPYVGDEAQSK 341
E A V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 342 RGILTLKYPIEHGIVTNWDDXEKIWHHTFYNELRVAP 452
R +L +KYP+E+GI+ ++++ ++W +TF+ +L++ P
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 86.2 bits (204), Expect = 5e-18
Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 8/93 (8%)
Frame = +1
Query: 451 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRT--------T 606
P + LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L A + T
Sbjct: 121 PEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLT 180
Query: 607 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 705
G V+DSGDGV+H +P+ EGY + +I + LAG
Sbjct: 181 GTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAG 213
Score = 64.1 bits (149), Expect = 2e-11
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 24/117 (20%)
Frame = +3
Query: 183 VVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGXK--------- 308
++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 9 IMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKR 67
Query: 309 -----DPYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDXEKIWHHTFYNELRVAPEEH 461
D ++G++A K +L YPI HG + NWD E+ W + + LR PE+H
Sbjct: 68 ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 56.0 bits (129), Expect = 7e-09
Identities = 33/100 (33%), Positives = 51/100 (51%)
Frame = +3
Query: 165 EEVAAXVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDPYVGDEAQSKR 344
+EV+A V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 345 GILTLKYPIEHGIVTNWDDXEKIWHHTFYNELRVAPEEHP 464
G + +K I +G V NWD +W + +L+ P EHP
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHP 100
Score = 54.4 bits (125), Expect = 2e-08
Identities = 28/74 (37%), Positives = 39/74 (52%)
Frame = +1
Query: 451 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGD 630
P P L+TE NP NR K + MFE+ PA Y+A Q + +A G+ T ++D G
Sbjct: 96 PLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGA 155
Query: 631 GVSHTVPIYEGYAL 672
S IY+G+ L
Sbjct: 156 ERSSVSAIYDGFVL 169
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 54.8 bits (126), Expect = 2e-08
Identities = 24/85 (28%), Positives = 45/85 (52%)
Frame = +1
Query: 451 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGD 630
P ++TE NP++ R+++ + FE + PA Y+ QAV +A ++T +++D G
Sbjct: 99 PTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGS 158
Query: 631 GVSHTVPIYEGYALPHAILRLDLAG 705
+ P+ +G + I + LAG
Sbjct: 159 DNASVTPVVDGLIIRKGIFKQSLAG 183
Score = 50.4 bits (115), Expect = 3e-07
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +3
Query: 165 EEVAAXVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDPYVGDEAQSKR 344
EE+ + V+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 345 GI--LTLKYPIEHGIVTNWDDXEKIWHHTFYNELRVAPEEHPXPAY*GSPQPQGQQRE 512
I + +K +GI+ +W+ W +L+V P E+ S PQ +++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQ 119
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.8 bits (126), Expect = 2e-08
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +1
Query: 463 PXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGR--TTGIVLDSGDGV 636
P +TE NP R MT+++FE +N P++ I + S Y + ++GIVL+ G+
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAA 176
Query: 637 SHTVPIYEGYALPHAILRLDLAGS 708
SH +P+ G + R+ GS
Sbjct: 177 SHVIPVLNGERILSEAKRISWGGS 200
Score = 52.0 bits (119), Expect = 1e-07
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +3
Query: 183 VVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDPYVGDEAQSKRGILTL- 359
V+DNGS +AG+ G+ P+ VF ++V R R + + VG++ + G ++
Sbjct: 28 VIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSIA 83
Query: 360 KYPIEHGIVTNWDDXEKIWHHTFYNELRVAPEEHP 464
+ P E +++NWD E++ +TF +L + EHP
Sbjct: 84 RSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHP 117
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 43.6 bits (98), Expect = 4e-05
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +1
Query: 502 NREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGDGVSHTVPIYEGYALPHA 681
+RE TQ FE P +A + ++ LYA G G+V+D G + PI +G + A
Sbjct: 161 DRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTA 220
Query: 682 ILRLDLAG 705
+L L G
Sbjct: 221 TQQLPLGG 228
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 225 GDDAPRAVFPSIVGRPRHQGVMVGMGXKDPYVGDEAQSKRGILTLKYP 368
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 572 PCSRCTRXVVPPVSCWTPATVSPTPCPSTRDTHSP 676
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 551 PCTSPSKPCSRCTRXVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 685
P T+P P T V P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 610 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 705
+V+DSG +H +P+ + A+ R+D+ G
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGG 190
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +3
Query: 183 VVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDPYVGDEAQSKRGILTLK 362
V+DNG+ KAGFAG P+ + R + + ++G+E + TL+
Sbjct: 9 VLDNGAYHIKAGFAGGKV--VEIPNCLTRSKDGNRL--------FLGNELANCNDFTTLQ 58
Query: 363 YPIEH--GIVTNWDDXEKIW 416
+ H G + +W +W
Sbjct: 59 FRRAHEKGYLVHWSTETAVW 78
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 469 LLTEAPLNPKANREKMTQIMFETFN 543
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +1
Query: 391 TGMTWRRFGIIPSTMSCVSPPRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 570
T +TW+ G P +S + N P L + L K T E P + AI+
Sbjct: 413 TNVTWKDAGYNPELLSINTITDNKPVLHVQEDLCKWWKESKGT--TSEATVAPTIQEAIE 470
Query: 571 AVLSLYAXGRTT 606
V+S+ R T
Sbjct: 471 TVMSIKQKSRNT 482
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 301 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 209
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 554 CTSPSKPCSRCTRXVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 697
C +PS+ C + PV + T S TP P+T + +PTP+ T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 333 VPHLLHKGPSVPYRPSRPDGGAFPRSRET 247
+ L+ K PS PY SRP A S T
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPT 334
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 539 STRPPCTSPSKPCSRCTRXVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 685
ST P T S S VPP S T + PT ST SP P+
Sbjct: 175 STSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,855
Number of Sequences: 5004
Number of extensions: 67183
Number of successful extensions: 215
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -