Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A14
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   9.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 134 QVGXSPIAFRVGLHPSAAILVAAG 205
           Q   SP+  RVG+H  A +    G
Sbjct: 357 QTTNSPVDMRVGIHTGAVLAGVLG 380


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 322 IGISALFILNKNCNMF*YDNKKYFKNL 402
           +G+  L +LN + NM  + + + FK+L
Sbjct: 332 LGLIRLIVLNLSYNMLTHIDARMFKDL 358


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 255  VHDTVLQTHFVAGSNHA 205
            V+   ++TH VAGSN A
Sbjct: 1567 VYQLKVETHNVAGSNQA 1583


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 255  VHDTVLQTHFVAGSNHA 205
            V+   ++TH VAGSN A
Sbjct: 1563 VYQLKVETHNVAGSNQA 1579


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,725
Number of Sequences: 438
Number of extensions: 2565
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)