Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A13
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.014
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    31   0.17 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.23 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.70 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   1.6  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    23   1.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.9  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   4.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +2

Query: 617 PPPPPXXXXXQPPXXXXXXXXXXXXXPPPPPPPP 718
           P PPP      PP             PPPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 31.9 bits (69), Expect = 0.099
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
 Frame = +1

Query: 616 PPPPPPXXXXXTP---XXXXXXXXXXXXXPXPPPPPP 717
           PPPPPP     TP                P PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 31.9 bits (69), Expect = 0.099
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 615 PPPPPPXXXXXNPXXXXXXXXXXXXXXXPPPPPPP 719
           PPPPPP      P                PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 31.9 bits (69), Expect = 0.099
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 614 PPPPPPXXXXXQPPXXXXXXXXXXXXXPPPPPPP 715
           P PPP       PP             PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +3

Query: 564 PPSPFXXXXXXAVFXXXPPPPPPXXXXXNPXXXXXXXXXXXXXXXPPPPP 713
           PP P       A      PPP P      P               PPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 115 FVLALLAMANAQDPVRVVENADSGNGYEPIDTRPGTSLIPPKR 243
           F+  +L++A  + P  V  + D+G GY P    P T ++ P R
Sbjct: 223 FLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTR 265


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +2

Query: 614 PPPPPPXXXXXQPPXXXXXXXXXXXXXPPPPPPP 715
           PPPPPP       P             PPPPPPP
Sbjct: 312 PPPPPPSRRNRGKP--PIGNGSSNSSLPPPPPPP 343



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +2

Query: 614 PPPPPPXXXXXQPPXXXXXXXXXXXXXPPPPPPPP 718
           PPPPP      +PP              PPPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSL----PPPPPPP 343



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +2

Query: 614 PPPPPPXXXXXQPPXXXXXXXXXXXXXPPPPPPP 715
           PP PPP       P             PP P PP
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +1

Query: 589 GGGXFFXXXPPPPPPXXXXXTPXXXXXXXXXXXXXPXPPPPPP 717
           G G      PPPPPP                      PPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAA----GSIPLPPQGRSAPPPPPP 366



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +2

Query: 614 PPPPPPXXXXXQPPXXXXXXXXXXXXXPPPPPP 712
           PPPPPP                     PP PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 617 PPPPPXXXXXQPPXXXXXXXXXXXXXPPPPPPP 715
           PPPPP     +PP             PPPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQ-----------PPPPPPP 30



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 695 PPPPPPPP 718
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +3

Query: 615 PPPPPPXXXXXNPXXXXXXXXXXXXXXXPPPPPPP 719
           PPPPPP      P               PPPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQ-------------PPPPPPP 30


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 695 PPPPPPPPXXXXFF 736
           PPPPPPPP    F+
Sbjct: 306 PPPPPPPPPSNDFW 319


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 23.0 bits (47), Expect(2) = 1.8
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +2

Query: 623 PPPXXXXXQPPXXXXXXXXXXXXXPPPPPPP 715
           PP      QP               PPPPPP
Sbjct: 215 PPSYAASTQPEFQQTTSPIFSSSSTPPPPPP 245



 Score = 23.0 bits (47), Expect(2) = 1.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 695 PPPPPPPP 718
           PPPPPP P
Sbjct: 240 PPPPPPRP 247


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 623 PPPXXXXXQPPXXXXXXXXXXXXXPPPPPPPP 718
           PPP     QPP              PPPPPPP
Sbjct: 167 PPPSF---QPPSAAAPATSLPSDYNPPPPPPP 195



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 695 PPPPPPPP 718
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 695 PPPPPPPP 718
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 23.4 bits (48), Expect(2) = 4.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 694 PXPPPPPP 717
           P PPPPPP
Sbjct: 236 PAPPPPPP 243



 Score = 21.0 bits (42), Expect(2) = 4.5
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 616 PPPPPP 633
           PPPPPP
Sbjct: 190 PPPPPP 195


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 695  PPPPPPPP 718
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 695 PPPPPPPP 718
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 695 PPPPPPPP 718
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 695 PPPPPPPP 718
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 614  PPPPPPXXXXXQPPXXXXXXXXXXXXXPPPPPPPP 718
            P PPPP      PP             PP  PPPP
Sbjct: 1705 PTPPPPPMSVPPPP-----SAPPMPAGPPSAPPPP 1734



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +2

Query: 617  PPPPPXXXXXQPPXXXXXXXXXXXXXPPPPPP 712
            P PPP      PP             PPPP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 392 RGXXPGGKXGGGGXXKXRGGPLGDR 318
           RG   GG+ G GG    RGG  G R
Sbjct: 40  RGGARGGRGGRGGARGGRGGSSGGR 64


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +2

Query: 614 PPPPPPXXXXXQPPXXXXXXXXXXXXXPPPPPPP 715
           PPP  P      PP             P  PPPP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,067
Number of Sequences: 5004
Number of extensions: 38264
Number of successful extensions: 455
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)