Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A12
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.6  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   6.1  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   6.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   8.1  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
 Frame = -1

Query: 453 LRWTSSCTRRCAAPTCSQPEPSYTLPLPPTRNEGPM-SQYCKASMWLVWIFRTSSSQPAS 277
           L  ++SCT   + P         T  +PPT +  P+ +  C  S  + +     +S P +
Sbjct: 387 LSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPY-----TSTPVT 441

Query: 276 VLQKGVTVCWTMTRLTGRARYDTCTGIKPSHCFLLTTSQS 157
                 T C T T +   +   T T +  ++C   TTS S
Sbjct: 442 STPLATTNCTTSTSVPYTSTPVTSTPLTTTNC---TTSTS 478


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 366 TRNEGPMSQYCKASMWLVWIFRTSSSQPAS 277
           T+   P   Y     WLVW     +S PAS
Sbjct: 447 TQGSAPPWHYIPCQSWLVWYPSEDASNPAS 476


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -3

Query: 532 PQRSSDRSASSIAPLGSSVLKL--PMNATPMDLELYP*VCGADVQPAGALVHLAVTSHQE 359
           P+  SD S  ++  L +S  +    + + P+ L   P   G  V  A  + HLA    ++
Sbjct: 379 PKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPGTGKTVTSASVVYHLATMQSRK 438

Query: 358 RGSDVPVL 335
           R S  PVL
Sbjct: 439 RKSHSPVL 446


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = +2

Query: 20  PSREFLKIWHARVLTC--WHAPL 82
           P   F KIWH R  +C  W +PL
Sbjct: 291 PGCPFYKIWHIRNTSCQSWPSPL 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,314
Number of Sequences: 5004
Number of extensions: 58594
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)