Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A12
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)                      29   6.5  
SB_24295| Best HMM Match : DUF1070 (HMM E-Value=3.9)                   29   6.5  
SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               28   8.6  
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)                    28   8.6  
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   28   8.6  
SB_36970| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 611 PAGALRGNELSVRHGAVVPREVAALHAAAQQRPQRLQHRAARLVRVEVADEC 456
           P  A  G + +  H   +P E        + RP  L H+  RL  V + DEC
Sbjct: 704 PRLACAGRDQTYHHSLCIPAE----KPVEEWRPSELGHKLDRLAEVLIIDEC 751


>SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)
          Length = 992

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 21/71 (29%), Positives = 28/71 (39%)
 Frame = -2

Query: 668 DGVHVLQPLRPASYLVVELPAGALRGNELSVRHGAVVPREVAALHAAAQQRPQRLQHRAA 489
           D V VL P    ++     P  A  G   +  H   +P E        + RP  L H+  
Sbjct: 685 DRVGVLTPENDLAHDHRNNPRLACAGRAQTYHHYLCIPAE----KPIEEWRPSELGHKLD 740

Query: 488 RLVRVEVADEC 456
           RL  V + DEC
Sbjct: 741 RLAEVIIIDEC 751


>SB_24295| Best HMM Match : DUF1070 (HMM E-Value=3.9)
          Length = 745

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 587 ELSVRHGAVVPREVAALHAAAQQRPQRLQHRAARLVRVEVADECDSD 447
           ++S R   +    V A     + RP  L H+  RL  V + DEC  D
Sbjct: 613 DVSSRPSRIGEDRVGAEKPIEEWRPSELGHKLDRLAEVIIIDECCKD 659


>SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 650 QPLRPASYLVVELPAGALRGNELSVRHGAVVPREVAALHAAAQQRPQRLQHRAARLVRVE 471
           +PLR  +Y + ELP         S    A +P  V   +A +    + L  R++R+ RV 
Sbjct: 77  EPLRWGAYPMTELPLNKPEPARPSYTSNACLPSMVTTTNAQSNTAAKPLAARSSRVRRVR 136

Query: 470 VA 465
            A
Sbjct: 137 TA 138


>SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 343

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -2

Query: 371 LPPGTRVRCP---SIARPPCGWSGYSARAPRSQR 279
           +PPGTR R P   + ARPP       AR PR QR
Sbjct: 214 IPPGTRARSPVDSAKARPPV--DSARARYPRRQR 245


>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 3404

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -1

Query: 231  TGRARYDTCTGIKPSHCFLLTTSQSA----AISVRSELRASASTTAEWRRAMSRSGACQH 64
            +G  RYD C G +   C ++    +A    A ++  E+R      A+    M+ +G   H
Sbjct: 2140 SGLRRYDWCVGKRTDACDVVEMKSAALDTYANAITEEIRTGTQLFAQ-VNVMNNAGHVTH 2198

Query: 63   VSTRACQIL 37
            + ++ C ++
Sbjct: 2199 LVSKPCVVI 2207


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 399 PEPSYTLPLPPTRNEGPMSQYC 334
           P P +  P PP  N GP  +YC
Sbjct: 214 PPPPFGAPPPPALNGGPPREYC 235


>SB_36970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -2

Query: 383 PCRYLPPGTRVRCPSI---ARPPCGWSGYSARAPRSQRP 276
           P   LPP   +  P I    RP  G+ GY  R P + RP
Sbjct: 184 PIPKLPPEVEIPAPKIPKFTRPTPGYGGYVPRYPVNPRP 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,563,650
Number of Sequences: 59808
Number of extensions: 546069
Number of successful extensions: 2036
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2032
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)