Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A12
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26240.1 68416.m03274 DC1 domain-containing protein contains ...    30   1.8  
At2g02630.1 68415.m00202 DC1 domain-containing protein contains ...    29   3.1  
At5g17500.1 68418.m02053 glycosyl hydrolase family 5 protein / c...    29   4.1  
At5g05680.1 68418.m00625 nuclear pore complex protein-related co...    29   5.4  
At2g27200.1 68415.m03269 GTP-binding family protein contains Pfa...    28   7.1  
At5g37850.1 68418.m04557 pfkB-type carbohydrate kinase family pr...    28   9.4  
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi...    28   9.4  
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t...    28   9.4  

>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 922

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -3

Query: 268 EGCDCVLDDDEAHGPRQVRHVHRDQTVPLLF---TDDVAIGCYFCEKRAESERE-YNC 107
           E CD  L    A  P+QVR+ H    +PL +   T D+   C  CE +   E   Y C
Sbjct: 764 EECDYALCFKCATLPQQVRYKHDKHILPLSYGKKTSDMTYWCEACEGKINPEEGFYRC 821


>At2g02630.1 68415.m00202 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 440

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 265 GCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESEREYNC 107
           GCD +L +  A  PR+  H      + L+F +D    C  C  R  +   Y C
Sbjct: 193 GCDFILHETCADAPRRKVHPLHPHPLKLIFYEDNCFHCKAC-WRTSTAFGYRC 244


>At5g17500.1 68418.m02053 glycosyl hydrolase family 5 protein /
           cellulase family protein predicted protein F3F19.15 -
           Arabidopsis thaliana, EMBL:AC007357
          Length = 526

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = -1

Query: 201 GIKPSHCFLLTTSQSAAISVRSELRASASTTAEWRRAMSRSGACQHVSTRACQILRNSL 25
           G+K      +       +S+R+ELR    T+ +W + M +     H S     ++ + L
Sbjct: 183 GLKKMATIFMNVKNVVGMSLRNELRGYNHTSKDWYKYMQKGAEAVHTSNPNVLVILSGL 241


>At5g05680.1 68418.m00625 nuclear pore complex protein-related
           contains weak similarity to Nuclear pore complex protein
           Nup88 (Nucleoporin Nup88) (88 kDa nuclear pore complex
           protein) (Swiss-Prot:Q99567) [Homo sapiens]
          Length = 810

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 152 AADCDVVSKKQWDGLIPVHVS 214
           + +C V   K WD L+P+HVS
Sbjct: 545 SGECIVAEMKTWDLLLPIHVS 565


>At2g27200.1 68415.m03269 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 537

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/82 (24%), Positives = 33/82 (40%)
 Frame = -3

Query: 301 HELLAASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESE 122
           H+ +  SV      D +++  +A    ++  +H D   P+    D   G       A+  
Sbjct: 35  HKKVLESVTEVSDIDAIIE--QAEEAERLFAIHHDSATPVPINMDT--GSSSSGITAKEW 90

Query: 121 REYNCRVEAGHVEERRVPARQH 56
           +E   R EA H    +VP R H
Sbjct: 91  KEQRMREEALHASSLQVPRRPH 112


>At5g37850.1 68418.m04557 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 309

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -3

Query: 313 LDIPHELLAASVRPAEGCDCVLDDD-EAHGPRQVRHVHRDQTVPL 182
           L++ ++L + +      CD V+ D+ + + P ++ HV+R++ VPL
Sbjct: 106 LEVINKLRSVNPNLTYVCDPVMGDEGKLYVPEELVHVYREKVVPL 150


>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 612

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -1

Query: 774 NYXTR*ILYEWTLVXDLNTXKNGXMRYAVIMLRXXXWSPRSPATQASVVSGCRASGRG 601
           +Y  R  L  +T + DL   ++G +  A  ++    + P  P T A+++S C+  GRG
Sbjct: 368 DYGIRPSLQHYTCLLDL-LGRSGLLDEAENLIHTMPFPPDEP-TWAALLSACKRQGRG 423


>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
           T15B16.10 similar to A. thaliana CHP-rich proteins
           encoded by T10M13, GenBank accession number AF001308
          Length = 667

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 301 HELLAASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEK 137
           H +   S      CD +L  + A  PR+  HV  ++ + L+ ++    GC  C K
Sbjct: 411 HPISPQSFYGCMDCDFILHQNCAGFPRRKWHVLHNERLALVTSEVNIFGCSACHK 465


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,020,247
Number of Sequences: 28952
Number of extensions: 346792
Number of successful extensions: 1356
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)