Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A11
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   191   1e-49

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  191 bits (465), Expect = 1e-49
 Identities = 86/122 (70%), Positives = 101/122 (82%)
 Frame = +2

Query: 53  WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
           WVPVTKLGRLV+ GKI  +E IYL+SLPIK ++  D+FL P LND V+K +PVQKQTRAG
Sbjct: 34  WVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAG 92

Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
           QRTRFKAFV  GD  G +GLG+KC KEVATAIRGAII+ KLS++P+RRGYWG  +G PHT
Sbjct: 93  QRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152

Query: 413 VP 418
           VP
Sbjct: 153 VP 154



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 28/46 (60%), Positives = 34/46 (73%)
 Frame = +3

Query: 384 GVTRSESHTPSLGKVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLLQ 521
           G    + HT  + KV+GKCGSVTVRL+PAPRG G+V+APV K  LQ
Sbjct: 144 GTALGDPHTVPV-KVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQ 188



 Score = 32.3 bits (70), Expect = 0.093
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 523 MAGVQDCYTSARGSXGHLGXF 585
           +AG++DCYT +RGS   LG F
Sbjct: 189 LAGIEDCYTQSRGSTKTLGNF 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,010
Number of Sequences: 5004
Number of extensions: 44844
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)