Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_A11
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0756 + 5819367-5820038,5820847-5821005 188 7e-48
03_06_0386 + 33555682-33556344,33557138-33557299 186 2e-47
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 39 0.006
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 37 0.024
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 6.5
02_04_0151 - 20240418-20240438,20240608-20240775,20240855-202409... 28 8.5
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 188 bits (457), Expect = 7e-48
Identities = 90/122 (73%), Positives = 99/122 (81%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLV+ KI K+E IYL SLP+K + + + P L D V+K PVQKQTRAG
Sbjct: 47 WVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAG 105
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAFV GD G +GLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 106 QRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 165
Query: 413 VP 418
VP
Sbjct: 166 VP 167
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLLQ 521
KVTGKCGSVTVR++PAPRG+GIV+A VPK +LQ
Sbjct: 169 KVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQ 201
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 186 bits (454), Expect = 2e-47
Identities = 88/122 (72%), Positives = 99/122 (81%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLV+ G+ K+E IYL SLP+K + + + P L D V+K PVQKQTRAG
Sbjct: 44 WVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAG 102
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAFV GD G +GLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHT
Sbjct: 103 QRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHT 162
Query: 413 VP 418
VP
Sbjct: 163 VP 164
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLLQ 521
KVTGKCGSVTVR++PAPRG+GIV+A VPK +LQ
Sbjct: 166 KVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 198
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +2
Query: 182 NDXVLKXMPVQKQTRAGQRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSV 361
++ V++ V K + G++ F+A V GD G +G+GV KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 362 LPV 370
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +3
Query: 405 HTPSLGKVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLLQ 521
HT S KV K GSVTVR++ P G+ +V+ VPK +L+
Sbjct: 49 HTVSC-KVADKYGSVTVRMMLPPMGSSVVATRVPKKVLK 86
Score = 35.1 bits (77), Expect = 0.074
Identities = 26/55 (47%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 254 FVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTV 415
FV GD I LGVKC K AT + GAIILA + G I KPHTV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTV 51
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -3
Query: 418 RDGVWLSDLVTPVTSSNX*NRQLSKDNSASNGSGDFLAALHTQTNXTVVVAXG 260
R VW++D TPVT+S+ LS NS++ D + TN T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>02_04_0151 -
20240418-20240438,20240608-20240775,20240855-20240962,
20241519-20241605,20241687-20241728,20241875-20241937,
20242007-20242069,20242129-20242497,20242577-20242669,
20242746-20242838,20242942-20243145,20243305-20243549,
20243649-20243808
Length = 571
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 542 QSCTPAILKKXLRNWRRHNSSTTRGRNQPDCYRTTL 435
QSC ILK R+WRR +S QP R+ L
Sbjct: 142 QSCKQWILKSTGRDWRRFKASLKTAYFQPKKKRSAL 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,370,339
Number of Sequences: 37544
Number of extensions: 371464
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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