Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A11
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              210   1e-54

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  210 bits (512), Expect = 1e-54
 Identities = 101/122 (82%), Positives = 105/122 (86%)
 Frame = +2

Query: 53  WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
           WVPVTKLGRLV+  KI  LE IYLFSLPIK FE  DFFLG +L D VLK MPVQKQTRAG
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67

Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
           QRTRFKAFVA GD  G +GLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 68  QRTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127

Query: 413 VP 418
           VP
Sbjct: 128 VP 129



 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 30/33 (90%), Positives = 30/33 (90%)
 Frame = +3

Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLLQ 521
           KVTGKCGS  VRLIPAPRGTGIVSAPVPK LLQ
Sbjct: 131 KVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQ 163



 Score = 33.9 bits (74), Expect = 0.17
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 523 MAGVQDCYTSARGSXGHLGXF 585
           MAG++DCYTS RG    LG F
Sbjct: 164 MAGIEDCYTSTRGQTATLGNF 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,757,535
Number of Sequences: 59808
Number of extensions: 407233
Number of successful extensions: 724
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)