Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_A11
(876 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml prot... 219 4e-57
U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal prot... 219 4e-57
U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal prot... 219 4e-57
AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p pro... 219 4e-57
AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA... 219 4e-57
>X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml protein
S2 protein.
Length = 267
Score = 219 bits (535), Expect = 4e-57
Identities = 119/203 (58%), Positives = 127/203 (62%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLVR GKI LE IYL+SLPIK FE DFFLG SL D VLK MPVQKQTRAG
Sbjct: 43 WVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAG 102
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAFVA GD G IGLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 103 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162
Query: 413 VPWQGHRQVWFCNSPADSCPSWYWNCVCXXXXXXXXEWLVYRTATPQLVVXLGTLGXFXX 592
VP + + + P V GTLG F
Sbjct: 163 VPCKVTGKCGSVSVRLIPAPRG-TGIVSAPVPRKLLTMAGIEDCYTSARGSTGTLGNFAK 221
Query: 593 XXXXXXXXXXXXLTPDLWRDIPL 661
LTPDLW+++PL
Sbjct: 222 ATYAAIAKTYAYLTPDLWKEMPL 244
Score = 64.1 bits (149), Expect = 2e-10
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLL 518
KVTGKCGSV+VRLIPAPRGTGIVSAPVP+ LL
Sbjct: 166 KVTGKCGSVSVRLIPAPRGTGIVSAPVPRKLL 197
Score = 39.5 bits (88), Expect = 0.006
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 523 MAGVQDCYTSARGSXGHLGXF 585
MAG++DCYTSARGS G LG F
Sbjct: 199 MAGIEDCYTSARGSTGTLGNF 219
>U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 219 bits (535), Expect = 4e-57
Identities = 119/203 (58%), Positives = 127/203 (62%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLVR GKI LE IYL+SLPIK FE DFFLG SL D VLK MPVQKQTRAG
Sbjct: 43 WVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAG 102
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAFVA GD G IGLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 103 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162
Query: 413 VPWQGHRQVWFCNSPADSCPSWYWNCVCXXXXXXXXEWLVYRTATPQLVVXLGTLGXFXX 592
VP + + + P V GTLG F
Sbjct: 163 VPCKVTGKCGSVSVRLIPAPRG-TGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAK 221
Query: 593 XXXXXXXXXXXXLTPDLWRDIPL 661
LTPDLW+++PL
Sbjct: 222 ATYAAIAKTYAYLTPDLWKEMPL 244
Score = 65.3 bits (152), Expect = 1e-10
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLL 518
KVTGKCGSV+VRLIPAPRGTGIVSAPVPK LL
Sbjct: 166 KVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLL 197
Score = 39.5 bits (88), Expect = 0.006
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 523 MAGVQDCYTSARGSXGHLGXF 585
MAG++DCYTSARGS G LG F
Sbjct: 199 MAGIEDCYTSARGSTGTLGNF 219
>U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 219 bits (535), Expect = 4e-57
Identities = 119/203 (58%), Positives = 127/203 (62%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLVR GKI LE IYL+SLPIK FE DFFLG SL D VLK MPVQKQTRAG
Sbjct: 43 WVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAG 102
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAFVA GD G IGLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 103 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162
Query: 413 VPWQGHRQVWFCNSPADSCPSWYWNCVCXXXXXXXXEWLVYRTATPQLVVXLGTLGXFXX 592
VP + + + P V GTLG F
Sbjct: 163 VPCKVTGKCGSVSVRLIPAPRG-TGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAK 221
Query: 593 XXXXXXXXXXXXLTPDLWRDIPL 661
LTPDLW+++PL
Sbjct: 222 ATYAAIAKTYAYLTPDLWKEMPL 244
Score = 65.3 bits (152), Expect = 1e-10
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLL 518
KVTGKCGSV+VRLIPAPRGTGIVSAPVPK LL
Sbjct: 166 KVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLL 197
Score = 39.5 bits (88), Expect = 0.006
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 523 MAGVQDCYTSARGSXGHLGXF 585
MAG++DCYTSARGS G LG F
Sbjct: 199 MAGIEDCYTSARGSTGTLGNF 219
>AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p
protein.
Length = 267
Score = 219 bits (535), Expect = 4e-57
Identities = 119/203 (58%), Positives = 127/203 (62%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLVR GKI LE IYL+SLPIK FE DFFLG SL D VLK MPVQKQTRAG
Sbjct: 43 WVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAG 102
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAFVA GD G IGLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 103 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162
Query: 413 VPWQGHRQVWFCNSPADSCPSWYWNCVCXXXXXXXXEWLVYRTATPQLVVXLGTLGXFXX 592
VP + + + P V GTLG F
Sbjct: 163 VPCKVTGKCGSVSVRLIPAPRG-TGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAK 221
Query: 593 XXXXXXXXXXXXLTPDLWRDIPL 661
LTPDLW+++PL
Sbjct: 222 ATYAAIAKTYAYLTPDLWKEMPL 244
Score = 65.3 bits (152), Expect = 1e-10
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLL 518
KVTGKCGSV+VRLIPAPRGTGIVSAPVPK LL
Sbjct: 166 KVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLL 197
Score = 39.5 bits (88), Expect = 0.006
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 523 MAGVQDCYTSARGSXGHLGXF 585
MAG++DCYTSARGS G LG F
Sbjct: 199 MAGIEDCYTSARGSTGTLGNF 219
>AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA
protein.
Length = 267
Score = 219 bits (535), Expect = 4e-57
Identities = 119/203 (58%), Positives = 127/203 (62%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLVR GKI LE IYL+SLPIK FE DFFLG SL D VLK MPVQKQTRAG
Sbjct: 43 WVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAG 102
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAFVA GD G IGLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 103 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162
Query: 413 VPWQGHRQVWFCNSPADSCPSWYWNCVCXXXXXXXXEWLVYRTATPQLVVXLGTLGXFXX 592
VP + + + P V GTLG F
Sbjct: 163 VPCKVTGKCGSVSVRLIPAPRG-TGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAK 221
Query: 593 XXXXXXXXXXXXLTPDLWRDIPL 661
LTPDLW+++PL
Sbjct: 222 ATYAAIAKTYAYLTPDLWKEMPL 244
Score = 65.3 bits (152), Expect = 1e-10
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLL 518
KVTGKCGSV+VRLIPAPRGTGIVSAPVPK LL
Sbjct: 166 KVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLL 197
Score = 39.5 bits (88), Expect = 0.006
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 523 MAGVQDCYTSARGSXGHLGXF 585
MAG++DCYTSARGS G LG F
Sbjct: 199 MAGIEDCYTSARGSTGTLGNF 219
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,780,587
Number of Sequences: 53049
Number of extensions: 608767
Number of successful extensions: 1114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -