Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A11
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   180   1e-45
AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical ...    29   4.4  
AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical ...    29   4.4  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  180 bits (438), Expect = 1e-45
 Identities = 90/122 (73%), Positives = 96/122 (78%)
 Frame = +2

Query: 53  WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
           W PVTKLGRLV+  KI  LE IYL SLPIK FE  D  L  +L D VLK  PVQKQT AG
Sbjct: 57  WTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAG 115

Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
           QRTRFKAFVA GD  G +GLGVKC KEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHT
Sbjct: 116 QRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHT 175

Query: 413 VP 418
           VP
Sbjct: 176 VP 177



 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 29/32 (90%), Positives = 29/32 (90%)
 Frame = +3

Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLL 518
           KVTGKC SV VRLIPAPRGTGIVSAPVPK LL
Sbjct: 179 KVTGKCASVMVRLIPAPRGTGIVSAPVPKKLL 210



 Score = 34.7 bits (76), Expect = 0.088
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +1

Query: 523 MAGVQDCYTSARGSXGHLGXF 585
           MAG++DCYT+A+GS   LG F
Sbjct: 212 MAGIEDCYTAAKGSTATLGNF 232


>AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical
           protein Y51A2A.11 protein.
          Length = 193

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 449 YRTTLAGDLAKGRCVAFRSCYPSNLFE 369
           +  T  G L K RCV   +C P+N FE
Sbjct: 95  HAVTWIGGLRKARCVNVAACAPANTFE 121


>AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical
           protein Y51A2A.7 protein.
          Length = 260

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 449 YRTTLAGDLAKGRCVAFRSCYPSNLFE 369
           +  T  G L K RCV   +C P+N FE
Sbjct: 162 HAVTWIGGLRKARCVNVAACAPANTFE 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,567,538
Number of Sequences: 27780
Number of extensions: 280733
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)