Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_A11
(876 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 204 5e-53
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 201 6e-52
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 201 6e-52
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 201 6e-52
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 201 6e-52
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 199 2e-51
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 41 0.001
At4g28040.2 68417.m04023 nodulin MtN21 family protein similar to... 30 1.8
At4g28040.1 68417.m04022 nodulin MtN21 family protein similar to... 30 1.8
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 204 bits (499), Expect = 5e-53
Identities = 93/122 (76%), Positives = 104/122 (85%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLV+ GKI K+E IYL SLP+K ++ D +GPSL D V+K MPVQKQTRAG
Sbjct: 45 WVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAG 104
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAF+ GD G +GLGVKC KEVATAIRGAIILAKLSV+P+RRGYWGNKIGKPHT
Sbjct: 105 QRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Query: 413 VP 418
VP
Sbjct: 165 VP 166
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLLQ 521
KVTGKCGSVTVR++PAPRG+GIV+A VPK +LQ
Sbjct: 168 KVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 200
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 201 bits (490), Expect = 6e-52
Identities = 94/122 (77%), Positives = 102/122 (83%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLV KI KLE IYL SLP+K ++ D +GP+L D V+K MPVQKQTRAG
Sbjct: 53 WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAG 112
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAFV GD G +GLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 113 QRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Query: 413 VP 418
VP
Sbjct: 173 VP 174
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLLQ 521
KVTGKCGSVTVR++PAPRG+GIV+A VPK +LQ
Sbjct: 176 KVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 208
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 201 bits (490), Expect = 6e-52
Identities = 94/122 (77%), Positives = 102/122 (83%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLV KI KLE IYL SLP+K ++ D +GP+L D V+K MPVQKQTRAG
Sbjct: 53 WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAG 112
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAFV GD G +GLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 113 QRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Query: 413 VP 418
VP
Sbjct: 173 VP 174
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLLQ 521
KVTGKCGSVTVR++PAPRG+GIV+A VPK +LQ
Sbjct: 176 KVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 208
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 201 bits (490), Expect = 6e-52
Identities = 94/122 (77%), Positives = 102/122 (83%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLV KI KLE IYL SLP+K ++ D +GP+L D V+K MPVQKQTRAG
Sbjct: 53 WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAG 112
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAFV GD G +GLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 113 QRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Query: 413 VP 418
VP
Sbjct: 173 VP 174
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLLQ 521
KVTGKCGSVTVR++PAPRG+GIV+A VPK +LQ
Sbjct: 176 KVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 208
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 201 bits (490), Expect = 6e-52
Identities = 94/122 (77%), Positives = 102/122 (83%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLV KI KLE IYL SLP+K ++ D +GP+L D V+K MPVQKQTRAG
Sbjct: 53 WVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAG 112
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAFV GD G +GLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 113 QRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Query: 413 VP 418
VP
Sbjct: 173 VP 174
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLLQ 521
KVTGKCGSVTVR++PAPRG+GIV+A VPK +LQ
Sbjct: 176 KVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 208
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 199 bits (486), Expect = 2e-51
Identities = 92/122 (75%), Positives = 102/122 (83%)
Frame = +2
Query: 53 WVPVTKLGRLVRXGKIDKLEXIYLFSLPIKXFEXXDFFLGPSLNDXVLKXMPVQKQTRAG 232
WVPVTKLGRLV G I ++E IYL SLP+K ++ D +GP+L D V+K MPVQKQTRAG
Sbjct: 54 WVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAG 113
Query: 233 QRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 412
QRTRFKAFV GD G +GLGVKC KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 114 QRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Query: 413 VP 418
VP
Sbjct: 174 VP 175
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +3
Query: 423 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKXLLQ 521
KVTGKCGSVTVR++PAPRG+GIV+A VPK +LQ
Sbjct: 177 KVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 209
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/62 (30%), Positives = 36/62 (58%)
Frame = +2
Query: 185 DXVLKXMPVQKQTRAGQRTRFKAFVAXGDXXGXIGLGVKCXKEVATAIRGAIILAKLSVL 364
+ V++ V K + G++ +F+A V GD G +G+G KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 365 PV 370
V
Sbjct: 209 QV 210
>At4g28040.2 68417.m04023 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 359
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 528 WCTGLLHLS-SWFXWAPWXILLKPHMLPLPRHMPTSLLTC 644
W G L S F W+ W IL P P H+ TS TC
Sbjct: 170 WLLGCFFLLISTFAWSLWLILQVPIASHCPDHLYTSACTC 209
>At4g28040.1 68417.m04022 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 359
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 528 WCTGLLHLS-SWFXWAPWXILLKPHMLPLPRHMPTSLLTC 644
W G L S F W+ W IL P P H+ TS TC
Sbjct: 170 WLLGCFFLLISTFAWSLWLILQVPIASHCPDHLYTSACTC 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,742,859
Number of Sequences: 28952
Number of extensions: 267209
Number of successful extensions: 555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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