BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP04_F_A08 (875 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.38 SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.66 SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 26 8.1 SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 8.1 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 30.3 bits (65), Expect = 0.38 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Frame = +1 Query: 505 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTV-IAPXTP 681 VTP P S S PP +T T S P +++ S T + T +ST + P P Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414 Query: 682 SNTXGT 699 + T Sbjct: 415 PTSSST 420 Score = 29.1 bits (62), Expect = 0.87 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +1 Query: 505 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPXTPS 684 VTP P S S PP +T T S P +++ S T + T +ST P TP+ Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST--TPVTPT 358 Score = 28.3 bits (60), Expect = 1.5 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = +1 Query: 505 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPXTP 681 +TP P S S+P P T+ + S P T ST S T + SS++ P TP Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249 Query: 682 S 684 + Sbjct: 250 T 250 Score = 27.5 bits (58), Expect = 2.7 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Frame = +1 Query: 505 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPXTP 681 +TP P S S+P P T+ + S P T ST + + + S+T + P P Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306 Score = 25.8 bits (54), Expect = 8.1 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Frame = +1 Query: 496 LHSVTPKTKPARKSPGSLPPCW-KTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAP 672 L++ TP T P S S W TT T S T+ST +T T ++ + Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657 Query: 673 XTPSNTXGT 699 T S++ T Sbjct: 658 STSSSSTAT 666 >SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 507 Score = 29.5 bits (63), Expect = 0.66 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -1 Query: 587 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 486 DLE N +V Q+ G G+FL G FG + FV+ Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444 >SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual Length = 409 Score = 25.8 bits (54), Expect = 8.1 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -1 Query: 719 FVHGGLKVPXVFEGVXGAITVDDTVI 642 F H + V G+ GAIT+DD++I Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSII 132 >SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosaccharomyces pombe|chr 3|||Manual Length = 1140 Score = 25.8 bits (54), Expect = 8.1 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +3 Query: 435 LINKRDXHALKLIDQQNHNKIAFGDSKDKTS 527 L+ K+D A K+ DQ H K+ +DK S Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,746,120 Number of Sequences: 5004 Number of extensions: 48397 Number of successful extensions: 161 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 158 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 438479610 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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