Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A08
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0618 - 16262826-16263097,16263111-16263183                       29   4.9  
11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286...    29   6.5  
05_03_0469 + 14439472-14440905                                         29   6.5  
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924...    28   8.5  

>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 178 SXWCKCGVRSQRTHGEDEGKTK---XGAAWRXG 89
           S  C+CG+RS+R    +E ++K    G  WR G
Sbjct: 24  SGHCRCGLRSRRCTAREEFRSKEEMLGIVWRDG 56


>11_04_0358 +
           16725417-16725422,16725789-16725858,16727825-16728693,
           16729109-16729198,16730071-16730356,16730573-16730592
          Length = 446

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -1

Query: 656 DDTVIXRTFRVIELQVLLVLGGHDLEVNSVVFQHGGKLPGDFLAGFVFG 510
           DDT       V+  ++  VLGG D+    V F  GG +    L GF+FG
Sbjct: 155 DDTTTEDDLMVVSAELEKVLGGVDVASARVSFAMGGGVDCP-LQGFLFG 202


>05_03_0469 + 14439472-14440905
          Length = 477

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 505 VTPKTKPARKSPGS--LPPCWKTTEFTSRSCPP 597
           +T  T+ AR  PG+  +PP W+    T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219


>01_05_0346 +
           21191542-21191783,21191988-21192072,21192159-21192422,
           21192518-21192820,21193695-21193799,21193916-21194020,
           21194613-21194712,21195614-21195933,21196183-21196359,
           21196432-21196560,21196592-21196636,21196851-21197078
          Length = 700

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 495 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDQQYLKLDNT 629
           I F D K+K  K    K    +EN+ + F +M+  D QYL  +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,739,070
Number of Sequences: 37544
Number of extensions: 333879
Number of successful extensions: 902
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)