Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A08
         (875 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_55379| Best HMM Match : SAM_2 (HMM E-Value=3e-05)                   29   6.5  
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              28   8.6  
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)                  28   8.6  
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +1

Query: 502 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPXTP 681
           S++P +   R S GSL P  +T+  TSRS  PR+ S       +    +  ST   P TP
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRS-TPRSRS-----RSRARTPSTPSTPSTPSTP 232

Query: 682 S 684
           S
Sbjct: 233 S 233


>SB_55379| Best HMM Match : SAM_2 (HMM E-Value=3e-05)
          Length = 1088

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 78   FQSXPLRQAAPXFVLPSSSPCVRWLLTPHLHQ 173
            F   PLRQ +   +LP S PC R   +P +HQ
Sbjct: 974  FADRPLRQFSEDVLLPPSLPCFR---SPRVHQ 1002


>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +2

Query: 410 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDH 589
           DLH  + Q  +Q G     + +  + QQ  ++  Q+Q QQ+ L +   +    +  L   
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQLQKKQQKQSSMEEKLSSE 617

Query: 590 VHR 598
           + +
Sbjct: 618 IEK 620


>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 458

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 511 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 612
           P TK         PP  K T +  R CPP T  T
Sbjct: 136 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 169



 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 511 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 612
           P TK         PP  K T +  R CPP T  T
Sbjct: 150 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 183



 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 511 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 612
           P TK         PP  K T +  R CPP T  T
Sbjct: 164 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 197



 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 511 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 612
           P TK         PP  K T +  R CPP T  T
Sbjct: 178 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 211


>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 259

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 511 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 612
           P TK         PP  K T +  R CPP T  T
Sbjct: 189 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 222


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 512 QRQNQQESLLEVYPRVGKQQSLLQDHVHRGP 604
           Q+Q QQ+ +++   + GK Q  L  H+ +GP
Sbjct: 536 QQQEQQQQIMQKQQKQGKLQEQLGQHLTQGP 566


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,073,811
Number of Sequences: 59808
Number of extensions: 377404
Number of successful extensions: 958
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)