Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_A07
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 198 4e-51
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 61 1e-09
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 43 3e-04
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 40 0.002
07_03_0406 + 17785046-17785408,17786411-17786479,17786764-177868... 37 0.017
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 33 0.37
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 33 0.37
03_02_1019 + 13244003-13245202,13245347-13245493,13245772-132460... 32 0.64
03_03_0166 - 15027065-15028465 29 6.0
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 198 bits (483), Expect = 4e-51
Identities = 91/158 (57%), Positives = 106/158 (67%)
Frame = +2
Query: 143 LPAPXXLXTPEANAFLNXLCNXXXLXCSPPRXXAXLLDKLVSVFLXXXCXNPXFXLXXPQ 322
L P L + EAN +L C + C PP+ LLDKLV FL C NP F + P+
Sbjct: 433 LNIPKDLSSDEANKYLIDACAKYDVKCPPPQTTTRLLDKLVGHFLEETCVNPTFIINHPE 492
Query: 323 XMXPLSKYHRXVPGLTXXFEVYVAKXXICNAYTELNDPATQREXFEEQAXNRAAGDDETP 502
M PL+K+HR PGLT FE++V K +CNAYTELNDP QR+ FEEQ +R +GDDE
Sbjct: 493 IMSPLAKWHRSRPGLTERFELFVNKHEVCNAYTELNDPVVQRQRFEEQLKDRQSGDDEAM 552
Query: 503 PTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIK 616
DE FCTALEYGLPPTGGWGLG+DRLTM LTDS NIK
Sbjct: 553 ALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIK 590
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 60.9 bits (141), Expect = 1e-09
Identities = 25/42 (59%), Positives = 33/42 (78%)
Frame = +2
Query: 509 DEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
DE F T+LEYG+PP G GLG+DRL M LT+S +I++V+ FP
Sbjct: 613 DEDFLTSLEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 654
Score = 48.4 bits (110), Expect = 7e-06
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +2
Query: 248 LLDKLVSVFLXXXCXNPXFXLXXPQXMXPLSKYHRXVPGLTXXFEVYVAKXXICNAYTEL 427
+L+++ + P F L P + PL+K HR GLT FE+++ I NA++EL
Sbjct: 486 VLNEVFETVVESSLVQPTFVLDYPVEISPLAKPHRRYAGLTERFELFICGREIGNAFSEL 545
Query: 428 NDPATQ 445
DP Q
Sbjct: 546 TDPIDQ 551
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 43.2 bits (97), Expect = 3e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 515 AFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
A+ A YG PP GG+G+G++R+ M NI++ LFP
Sbjct: 461 AYVDAFRYGAPPHGGFGVGLERVVMLFCGLGNIRKASLFP 500
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 533 EYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
+ G PP GG G+DRL M L N+I++V+ FP
Sbjct: 637 DMGAPPHGGIAYGLDRLVMLLAGENSIRDVIAFP 670
>07_03_0406 +
17785046-17785408,17786411-17786479,17786764-17786868,
17787297-17787346,17787363-17787489,17788084-17788221,
17788863-17788940,17789141-17789218,17789318-17789386,
17789720-17789803,17789895-17789981,17790364-17790459,
17790541-17790615,17790762-17790888,17791027-17791142
Length = 553
Score = 37.1 bits (82), Expect = 0.017
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 536 YGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
YG P G+GLG +RL F T +NI++ + FP
Sbjct: 513 YGSVPHAGFGLGFERLVQFATGMDNIRDTIPFP 545
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 443 QREXFEEQAXNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLT 598
QR E RA T ++ + YG PP GG+G+G++R+ + T
Sbjct: 478 QRIHLPELLTKRATECGIDASTISSYIESFSYGAPPHGGFGVGLERVLLLST 529
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 32.7 bits (71), Expect = 0.37
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 536 YGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
+G G+GLG +R+ +F T NI++V+ FP
Sbjct: 519 FGSVKHSGFGLGFERMILFATGLENIRDVIPFP 551
>03_02_1019 +
13244003-13245202,13245347-13245493,13245772-13246099,
13246930-13246994
Length = 579
Score = 31.9 bits (69), Expect = 0.64
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 527 LYKTLHRLGEFHRHQQHDSXLALRXFRVVSPGHLIRCRH 411
++K LH G + + + AL FR+ +P H +R RH
Sbjct: 515 MFKMLHPQGSYTDYISNQLWRALEHFRMTTPNHAVRDRH 553
>03_03_0166 - 15027065-15028465
Length = 466
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 538 WPAADRRVGPRCRPFDYVPYR 600
W AA RR G RC DYV Y+
Sbjct: 24 WTAASRRRGMRCYLLDYVCYK 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,837,270
Number of Sequences: 37544
Number of extensions: 306250
Number of successful extensions: 641
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -