Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A07
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)             215   4e-56
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)           41   0.001
SB_18283| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.013
SB_24107| Best HMM Match : tRNA-synt_2 (HMM E-Value=3.4e-09)           35   0.093
SB_48310| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.093

>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score =  215 bits (525), Expect = 4e-56
 Identities = 101/166 (60%), Positives = 117/166 (70%)
 Frame = +2

Query: 119  LXRVLNVXLPAPXXLXTPEANAFLNXLCNXXXLXCSPPRXXAXLLDKLVSVFLXXXCXNP 298
            L +VL V LP+P    TPEAN  L+ LC    + C+PPR  A LLDKLV  FL   C +P
Sbjct: 897  LEKVLGVRLPSPQDFNTPEANKLLDQLCVKHEVDCAPPRTTARLLDKLVGEFLESQCVSP 956

Query: 299  XFXLXXPQXMXPLSKYHRXVPGLTXXFEVYVAKXXICNAYTELNDPATQREXFEEQAXNR 478
             F +  P+ M PLSK+HR   GLT  FE++V    ICNAYTELNDP  QRE FE+QA ++
Sbjct: 957  TFIIDHPEIMSPLSKWHRKEKGLTERFELFVCCKEICNAYTELNDPMVQRERFEQQAKDK 1016

Query: 479  AAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIK 616
            AAGDDE    DE FCT+LE+GLPPT GWGLGVDRLTMFLTDSNNIK
Sbjct: 1017 AAGDDEAMFVDENFCTSLEFGLPPTAGWGLGVDRLTMFLTDSNNIK 1062


>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
          Length = 479

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 22/92 (23%), Positives = 48/92 (52%)
 Frame = +2

Query: 359 PGLTXXFEVYVAKXXICNAYTELNDPATQREXFEEQAXNRAAGDDETPPTDEAFCTALEY 538
           P ++  +++++    + +    ++DP    E  +E+A +    D ET    +++  +  Y
Sbjct: 388 PNVSNSYDMFIRGEEVLSGAQRIHDP----EKLKERASHHGI-DLETI---KSYIDSFRY 439

Query: 539 GLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
           G PP  G G+G+ R+ M   D +N+++  +FP
Sbjct: 440 GAPPHAGGGIGLARVVMLYLDLHNVRKSSMFP 471


>SB_18283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +2

Query: 554 GGWGLGVDRLTMFLTDSNNIKEVLLFPXN 640
           GG  LG+DRL M L    NI+EV+ FP N
Sbjct: 2   GGIALGLDRLAMLLAGQENIREVIAFPKN 30


>SB_24107| Best HMM Match : tRNA-synt_2 (HMM E-Value=3.4e-09)
          Length = 187

 Score = 34.7 bits (76), Expect = 0.093
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 533 EYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
           +YG  P GG+GLG++R   +L +  +I++V  +P
Sbjct: 146 KYGSCPHGGYGLGLERFLTWLLNRQHIRDVCFYP 179


>SB_48310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 34.7 bits (76), Expect = 0.093
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 533 EYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
           +YG  P GG+GLG++R   +L +  +I++V  +P
Sbjct: 46  KYGSCPHGGYGLGLERFLTWLLNRQHIRDVCFYP 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,507,790
Number of Sequences: 59808
Number of extensions: 334416
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)