Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_A07
(830 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 206 1e-53
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 206 1e-53
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 206 1e-53
Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical p... 44 1e-04
Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 40 0.003
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 30 2.3
AC024776-22|AAK68478.3| 701|Caenorhabditis elegans Hypothetical... 29 4.1
AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like tra... 29 5.4
AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-lik... 29 5.4
U29614-8|AAA68812.2| 395|Caenorhabditis elegans Hypothetical pr... 28 9.4
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 28 9.4
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 28 9.4
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 28 9.4
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 28 9.4
AF026214-7|AAP68943.1| 640|Caenorhabditis elegans Hypothetical ... 28 9.4
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 206 bits (503), Expect = 1e-53
Identities = 96/172 (55%), Positives = 114/172 (66%)
Frame = +2
Query: 119 LXRVLNVXLPAPXXLXTPEANAFLNXLCNXXXLXCSPPRXXAXLLDKLVSVFLXXXCXNP 298
L L LP P L T EA + LC + CS PR A LLDKLV +L +P
Sbjct: 322 LAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARLLDKLVGEYLESTFISP 381
Query: 299 XFXLXXPQXMXPLSKYHRXVPGLTXXFEVYVAKXXICNAYTELNDPATQREXFEEQAXNR 478
F + PQ M PL+K+HR +PGLT FE++ I NAYTELNDP TQR+ FE+QA ++
Sbjct: 382 TFLIGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQRFEQQAKDK 441
Query: 479 AAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
AGDDE DE FC ALEYGLPPTGGWG+G+DRL+M LTD+NNIKEVLLFP
Sbjct: 442 DAGDDEAQMIDETFCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 493
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 206 bits (503), Expect = 1e-53
Identities = 96/172 (55%), Positives = 114/172 (66%)
Frame = +2
Query: 119 LXRVLNVXLPAPXXLXTPEANAFLNXLCNXXXLXCSPPRXXAXLLDKLVSVFLXXXCXNP 298
L L LP P L T EA + LC + CS PR A LLDKLV +L +P
Sbjct: 404 LAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARLLDKLVGEYLESTFISP 463
Query: 299 XFXLXXPQXMXPLSKYHRXVPGLTXXFEVYVAKXXICNAYTELNDPATQREXFEEQAXNR 478
F + PQ M PL+K+HR +PGLT FE++ I NAYTELNDP TQR+ FE+QA ++
Sbjct: 464 TFLIGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQRFEQQAKDK 523
Query: 479 AAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
AGDDE DE FC ALEYGLPPTGGWG+G+DRL+M LTD+NNIKEVLLFP
Sbjct: 524 DAGDDEAQMIDETFCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 575
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 206 bits (503), Expect = 1e-53
Identities = 96/172 (55%), Positives = 114/172 (66%)
Frame = +2
Query: 119 LXRVLNVXLPAPXXLXTPEANAFLNXLCNXXXLXCSPPRXXAXLLDKLVSVFLXXXCXNP 298
L L LP P L T EA + LC + CS PR A LLDKLV +L +P
Sbjct: 380 LAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARLLDKLVGEYLESTFISP 439
Query: 299 XFXLXXPQXMXPLSKYHRXVPGLTXXFEVYVAKXXICNAYTELNDPATQREXFEEQAXNR 478
F + PQ M PL+K+HR +PGLT FE++ I NAYTELNDP TQR+ FE+QA ++
Sbjct: 440 TFLIGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQRFEQQAKDK 499
Query: 479 AAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
AGDDE DE FC ALEYGLPPTGGWG+G+DRL+M LTD+NNIKEVLLFP
Sbjct: 500 DAGDDEAQMIDETFCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 551
>Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical
protein F22D6.3a protein.
Length = 545
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = +2
Query: 533 EYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
+YG P GG+GLG++R +LTD+N+I++V L+P
Sbjct: 504 KYGSVPHGGYGLGLERFICWLTDTNHIRDVCLYP 537
>Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical
protein F10C2.6 protein.
Length = 593
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +2
Query: 503 PTDEA--FCTALEYGLPPTGGWGLGVDRLTMFLTDSNN----IKEVLLFP 634
PTDE AL +G PP GG+ LG+DR LT N +++V+ FP
Sbjct: 510 PTDEMEHLLNALSHGAPPHGGFALGLDRFVAMLTSDGNPLTPVRDVIAFP 559
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 512 EAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 634
+++ + +YG PP G G+G++R+TM +NI+ LFP
Sbjct: 483 QSYIDSFKYGCPPHAGGGIGLERVTMLFLGLHNIRLASLFP 523
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 539 GLPPTGGWGLGVDRLTMFL 595
G PPTGG+G+G +R+ +L
Sbjct: 379 GQPPTGGFGIGFERMLQYL 397
>AC024776-22|AAK68478.3| 701|Caenorhabditis elegans Hypothetical
protein Y41D4B.4 protein.
Length = 701
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 714 LRSELMFVHPHSLLLYCFCLGHQASLXGNNNTSLIL 607
L +++ HPH L YCF L A L ++ + IL
Sbjct: 533 LLEDVITEHPHILAAYCFLLNEYARLKNSDKCNEIL 568
>AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like
transcription factorELT-6 protein.
Length = 367
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +2
Query: 407 CNAYTELND---PATQREXFEEQAXNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVD 577
C Y L+ P R+ F +Q R +DE P T +A + GLP G +
Sbjct: 289 CGLYYRLHRTHRPVHMRKDFIQQRFRRRMREDENPATSQAAVFSQLLGLPSMANG--GAN 346
Query: 578 RLTMFLTDSNNIKE 619
LT FL N + +
Sbjct: 347 ALT-FLEQINQLNQ 359
>AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-like
transcription factorfamily protein 6 protein.
Length = 367
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +2
Query: 407 CNAYTELND---PATQREXFEEQAXNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVD 577
C Y L+ P R+ F +Q R +DE P T +A + GLP G +
Sbjct: 289 CGLYYRLHRTHRPVHMRKDFIQQRFRRRMREDENPATSQAAVFSQLLGLPSMANG--GAN 346
Query: 578 RLTMFLTDSNNIKE 619
LT FL N + +
Sbjct: 347 ALT-FLEQINQLNQ 359
>U29614-8|AAA68812.2| 395|Caenorhabditis elegans Hypothetical
protein F18E9.7 protein.
Length = 395
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 416 YTELNDPATQREXFEEQAXNRAAGDDETPPTDE 514
Y LN+P+T+RE E ++A +D+T D+
Sbjct: 181 YQPLNNPSTKREALEFLKHLKSASEDKTLTVDD 213
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/62 (22%), Positives = 23/62 (37%)
Frame = +2
Query: 449 EXFEEQAXNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLL 628
E F+ + DD+ P + YG PP + + T + SNN+ +
Sbjct: 162 EPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLARYPI 221
Query: 629 FP 634
P
Sbjct: 222 AP 223
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/62 (22%), Positives = 23/62 (37%)
Frame = +2
Query: 449 EXFEEQAXNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLL 628
E F+ + DD+ P + YG PP + + T + SNN+ +
Sbjct: 200 EPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLARYPI 259
Query: 629 FP 634
P
Sbjct: 260 AP 261
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/62 (22%), Positives = 23/62 (37%)
Frame = +2
Query: 449 EXFEEQAXNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLL 628
E F+ + DD+ P + YG PP + + T + SNN+ +
Sbjct: 200 EPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLARYPI 259
Query: 629 FP 634
P
Sbjct: 260 AP 261
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/62 (22%), Positives = 23/62 (37%)
Frame = +2
Query: 449 EXFEEQAXNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLL 628
E F+ + DD+ P + YG PP + + T + SNN+ +
Sbjct: 162 EPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLARYPI 221
Query: 629 FP 634
P
Sbjct: 222 AP 223
>AF026214-7|AAP68943.1| 640|Caenorhabditis elegans Hypothetical
protein F52H2.1 protein.
Length = 640
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 670 QKKRMWVYKHQFRTELTNLLFKKMFCNN 753
Q MWV H TEL N+ F KM N
Sbjct: 363 QVTTMWVNIHNHATELKNIAFLKMLTPN 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,537,726
Number of Sequences: 27780
Number of extensions: 241585
Number of successful extensions: 471
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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